Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0126 and DvMF_0127 are separated by 167 nucleotides DvMF_0127 and DvMF_0128 are separated by 174 nucleotides DvMF_0128 and DvMF_0129 are separated by 192 nucleotides
DvMF_0126: DvMF_0126 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 137,757 to 139,697
_0126
DvMF_0127: DvMF_0127 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 139,865 to 142,180
_0127
DvMF_0128: DvMF_0128 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 142,355 to 142,972
_0128
DvMF_0129: DvMF_0129 - 6-pyruvoyl tetrahydropterin synthase and hypothetical protein (RefSeq), at 143,165 to 143,557
_0129
Position (kb) 139
140
141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 140.098 kb on - strand, within DvMF_0127 at 140.129 kb on + strand, within DvMF_0127 at 140.481 kb on + strand, within DvMF_0127 at 140.590 kb on + strand, within DvMF_0127 at 140.684 kb on - strand, within DvMF_0127 at 140.922 kb on + strand, within DvMF_0127 at 141.007 kb on + strand, within DvMF_0127 at 141.078 kb on - strand, within DvMF_0127 at 141.189 kb on + strand, within DvMF_0127 at 141.422 kb on - strand, within DvMF_0127 at 141.472 kb on + strand, within DvMF_0127 at 141.512 kb on - strand, within DvMF_0127 at 141.530 kb on - strand, within DvMF_0127 at 141.780 kb on - strand, within DvMF_0127 at 141.914 kb on + strand, within DvMF_0127 at 141.914 kb on + strand, within DvMF_0127 at 142.570 kb on - strand, within DvMF_0128 at 142.741 kb on + strand, within DvMF_0128 at 142.847 kb on + strand, within DvMF_0128
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 140,098 - DvMF_0127 0.10 -1.5 140,129 + DvMF_0127 0.11 -1.2 140,481 + DvMF_0127 0.27 -1.7 140,590 + DvMF_0127 0.31 -2.3 140,684 - DvMF_0127 0.35 -1.4 140,922 + DvMF_0127 0.46 -0.5 141,007 + DvMF_0127 0.49 -1.7 141,078 - DvMF_0127 0.52 -0.7 141,189 + DvMF_0127 0.57 -2.5 141,422 - DvMF_0127 0.67 -3.6 141,472 + DvMF_0127 0.69 -1.3 141,512 - DvMF_0127 0.71 -0.3 141,530 - DvMF_0127 0.72 -1.9 141,780 - DvMF_0127 0.83 -0.8 141,914 + DvMF_0127 0.88 -3.0 141,914 + DvMF_0127 0.88 -1.8 142,570 - DvMF_0128 0.35 -1.0 142,741 + DvMF_0128 0.62 -2.1 142,847 + DvMF_0128 0.80 -2.2
Or see this region's nucleotide sequence