Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.724.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotidesXcc-8004.724.1 and Xcc-8004.726.1 are separated by 563 nucleotides Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175 Xcc-8004.723.1 Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799 Xcc-8004.724.1 Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920 Xcc-8004.726.1 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 674.432 kb on + strand, within Xcc-8004.723.1at 674.634 kb on - strand, within Xcc-8004.723.1at 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.290 kb on - strandat 675.326 kb on - strandat 675.330 kb on + strandat 675.396 kb on - strandat 675.396 kb on - strandat 675.396 kb on - strandat 675.421 kb on + strand, within Xcc-8004.724.1at 675.422 kb on - strand, within Xcc-8004.724.1at 675.424 kb on - strand, within Xcc-8004.724.1at 675.453 kb on + strand, within Xcc-8004.724.1at 675.454 kb on - strand, within Xcc-8004.724.1at 675.614 kb on + strand, within Xcc-8004.724.1at 675.615 kb on - strand, within Xcc-8004.724.1at 675.875 kb on - strand, within Xcc-8004.724.1at 675.953 kb on + strand, within Xcc-8004.724.1at 675.953 kb on + strand, within Xcc-8004.724.1at 676.067 kb on + strand, within Xcc-8004.724.1at 676.067 kb on + strand, within Xcc-8004.724.1at 676.068 kb on - strand, within Xcc-8004.724.1at 676.068 kb on - strand, within Xcc-8004.724.1at 676.146 kb on - strand, within Xcc-8004.724.1at 676.176 kb on - strand, within Xcc-8004.724.1at 676.520 kb on - strand, within Xcc-8004.724.1at 676.520 kb on - strand, within Xcc-8004.724.1at 676.601 kb on + strand, within Xcc-8004.724.1at 676.811 kb on + strandat 676.811 kb on + strandat 676.864 kb on + strandat 676.877 kb on - strandat 676.890 kb on + strandat 676.891 kb on - strandat 676.891 kb on - strandat 676.891 kb on - strandat 676.894 kb on + strandat 676.894 kb on + strandat 676.895 kb on - strandat 676.895 kb on - strandat 676.895 kb on - strandat 676.897 kb on + strandat 676.915 kb on - strandat 677.046 kb on + strandat 677.080 kb on - strandat 677.153 kb on - strandat 677.153 kb on - strandat 677.163 kb on + strandat 677.163 kb on + strandat 677.256 kb on + strandat 677.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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674,432 + Xcc-8004.723.1 0.74 -1.2
674,634 - Xcc-8004.723.1 0.81 -0.3
675,289 + -1.0
675,289 + +0.8
675,289 + -0.6
675,289 + -0.6
675,289 + +1.2
675,290 - -0.5
675,326 - -0.5
675,330 + +0.5
675,396 - +0.5
675,396 - -1.2
675,396 - +0.4
675,421 + Xcc-8004.724.1 0.11 -0.7
675,422 - Xcc-8004.724.1 0.11 -0.7
675,424 - Xcc-8004.724.1 0.11 +1.0
675,453 + Xcc-8004.724.1 0.13 +0.8
675,454 - Xcc-8004.724.1 0.13 +0.8
675,614 + Xcc-8004.724.1 0.23 +0.3
675,615 - Xcc-8004.724.1 0.23 +0.8
675,875 - Xcc-8004.724.1 0.40 +1.6
675,953 + Xcc-8004.724.1 0.45 +0.8
675,953 + Xcc-8004.724.1 0.45 -0.8
676,067 + Xcc-8004.724.1 0.52 +1.4
676,067 + Xcc-8004.724.1 0.52 -0.1
676,068 - Xcc-8004.724.1 0.53 -2.1
676,068 - Xcc-8004.724.1 0.53 +0.8
676,146 - Xcc-8004.724.1 0.58 -1.7
676,176 - Xcc-8004.724.1 0.60 +0.8
676,520 - Xcc-8004.724.1 0.82 +3.1
676,520 - Xcc-8004.724.1 0.82 -0.9
676,601 + Xcc-8004.724.1 0.87 +1.2
676,811 + +0.1
676,811 + +0.5
676,864 + +0.4
676,877 - +0.4
676,890 + +0.8
676,891 - -1.9
676,891 - -0.5
676,891 - -0.2
676,894 + +0.0
676,894 + +1.7
676,895 - +1.3
676,895 - -1.6
676,895 - +0.1
676,897 + +1.0
676,915 - -0.8
677,046 + +0.8
677,080 - -0.2
677,153 - +0.8
677,153 - +0.2
677,163 + -0.2
677,163 + -1.3
677,256 + -2.2
677,328 + +0.2

Or see this region's nucleotide sequence