Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4920.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4919.1 and Xcc-8004.4921.1 are separated by 71 nucleotidesXcc-8004.4921.1 and Xcc-8004.4920.1 are separated by 357 nucleotidesXcc-8004.4920.1 and Xcc-8004.4922.1 are separated by 9 nucleotides Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829 Xcc-8004.4919.1 Xcc-8004.4921.1: Xcc-8004.4921.1 - FIG01213962: hypothetical protein, at 4,680,901 to 4,681,134 Xcc-8004.4921.1 Xcc-8004.4920.1: Xcc-8004.4920.1 - POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE), at 4,681,492 to 4,682,613 Xcc-8004.4920.1 Xcc-8004.4922.1: Xcc-8004.4922.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 4,682,623 to 4,683,678 Xcc-8004.4922.1 Position (kb) 4681 4682 4683Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.723 kb on - strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.949 kb on + strand, within Xcc-8004.4921.1at 4680.949 kb on + strand, within Xcc-8004.4921.1at 4680.950 kb on - strand, within Xcc-8004.4921.1at 4681.106 kb on - strand, within Xcc-8004.4921.1at 4681.141 kb on + strandat 4681.141 kb on + strandat 4681.142 kb on - strandat 4681.147 kb on + strandat 4681.163 kb on + strandat 4681.180 kb on - strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.200 kb on - strandat 4681.234 kb on + strandat 4681.252 kb on + strandat 4681.252 kb on + strandat 4681.253 kb on - strandat 4681.253 kb on - strandat 4681.373 kb on + strandat 4681.374 kb on - strandat 4681.374 kb on - strandat 4681.374 kb on - strandat 4681.404 kb on - strandat 4681.526 kb on - strandat 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.611 kb on - strand, within Xcc-8004.4920.1at 4681.611 kb on - strand, within Xcc-8004.4920.1at 4681.664 kb on + strand, within Xcc-8004.4920.1at 4681.689 kb on - strand, within Xcc-8004.4920.1at 4681.689 kb on - strand, within Xcc-8004.4920.1at 4681.784 kb on + strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1at 4681.962 kb on - strand, within Xcc-8004.4920.1at 4681.962 kb on - strand, within Xcc-8004.4920.1at 4682.132 kb on + strand, within Xcc-8004.4920.1at 4682.132 kb on + strand, within Xcc-8004.4920.1at 4682.132 kb on + strand, within Xcc-8004.4920.1at 4682.211 kb on + strand, within Xcc-8004.4920.1at 4682.211 kb on + strand, within Xcc-8004.4920.1at 4682.212 kb on - strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.213 kb on + strand, within Xcc-8004.4920.1at 4682.214 kb on - strand, within Xcc-8004.4920.1at 4682.214 kb on - strand, within Xcc-8004.4920.1at 4682.214 kb on - strand, within Xcc-8004.4920.1at 4682.214 kb on - strand, within Xcc-8004.4920.1at 4682.279 kb on + strand, within Xcc-8004.4920.1at 4682.279 kb on + strand, within Xcc-8004.4920.1at 4682.279 kb on + strand, within Xcc-8004.4920.1at 4682.279 kb on + strand, within Xcc-8004.4920.1at 4682.280 kb on - strand, within Xcc-8004.4920.1at 4682.280 kb on - strand, within Xcc-8004.4920.1at 4682.280 kb on - strand, within Xcc-8004.4920.1at 4682.280 kb on - strand, within Xcc-8004.4920.1at 4682.280 kb on - strand, within Xcc-8004.4920.1at 4682.318 kb on + strand, within Xcc-8004.4920.1at 4682.318 kb on + strand, within Xcc-8004.4920.1at 4682.318 kb on + strand, within Xcc-8004.4920.1at 4682.423 kb on - strand, within Xcc-8004.4920.1at 4682.423 kb on - strand, within Xcc-8004.4920.1at 4682.423 kb on - strand, within Xcc-8004.4920.1at 4682.498 kb on + strand, within Xcc-8004.4920.1at 4682.499 kb on - strand, within Xcc-8004.4920.1at 4682.499 kb on - strand, within Xcc-8004.4920.1at 4682.499 kb on - strand, within Xcc-8004.4920.1at 4682.624 kb on + strandat 4682.624 kb on + strandat 4682.624 kb on + strandat 4682.625 kb on - strandat 4682.671 kb on + strandat 4682.671 kb on + strandat 4682.671 kb on + strandat 4682.671 kb on + strandat 4682.671 kb on + strandat 4682.671 kb on + strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.672 kb on - strandat 4682.845 kb on - strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.167 kb on + strand, within Xcc-8004.4922.1at 4683.168 kb on - strand, within Xcc-8004.4922.1at 4683.168 kb on - strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.350 kb on + strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.351 kb on - strand, within Xcc-8004.4922.1at 4683.425 kb on + strand, within Xcc-8004.4922.1at 4683.425 kb on + strand, within Xcc-8004.4922.1at 4683.426 kb on - strand, within Xcc-8004.4922.1at 4683.426 kb on - strand, within Xcc-8004.4922.1at 4683.426 kb on - strand, within Xcc-8004.4922.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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4,680,554 + Xcc-8004.4919.1 0.82 +0.5
4,680,554 + Xcc-8004.4919.1 0.82 -0.6
4,680,554 + Xcc-8004.4919.1 0.82 +0.9
4,680,722 + +0.6
4,680,722 + +0.4
4,680,722 + -0.2
4,680,722 + -1.6
4,680,723 - +0.0
4,680,850 + +2.1
4,680,850 + -1.1
4,680,850 + +0.1
4,680,850 + -1.1
4,680,949 + Xcc-8004.4921.1 0.21 -0.4
4,680,949 + Xcc-8004.4921.1 0.21 +0.2
4,680,950 - Xcc-8004.4921.1 0.21 +0.5
4,681,106 - Xcc-8004.4921.1 0.88 -0.8
4,681,141 + +0.3
4,681,141 + +0.0
4,681,142 - -0.9
4,681,147 + +1.1
4,681,163 + +1.6
4,681,180 - -0.8
4,681,199 + +0.1
4,681,199 + -2.0
4,681,199 + +0.5
4,681,199 + -0.0
4,681,200 - -0.5
4,681,234 + +0.1
4,681,252 + -0.0
4,681,252 + +0.0
4,681,253 - -0.5
4,681,253 - +0.6
4,681,373 + -1.2
4,681,374 - -1.9
4,681,374 - -1.1
4,681,374 - -0.0
4,681,404 - -0.4
4,681,526 - +1.3
4,681,610 + Xcc-8004.4920.1 0.11 -0.2
4,681,610 + Xcc-8004.4920.1 0.11 +2.4
4,681,610 + Xcc-8004.4920.1 0.11 -0.6
4,681,611 - Xcc-8004.4920.1 0.11 +0.5
4,681,611 - Xcc-8004.4920.1 0.11 -1.6
4,681,664 + Xcc-8004.4920.1 0.15 -1.4
4,681,689 - Xcc-8004.4920.1 0.18 -0.5
4,681,689 - Xcc-8004.4920.1 0.18 +0.0
4,681,784 + Xcc-8004.4920.1 0.26 +1.1
4,681,785 - Xcc-8004.4920.1 0.26 +1.0
4,681,785 - Xcc-8004.4920.1 0.26 +1.5
4,681,785 - Xcc-8004.4920.1 0.26 +0.7
4,681,962 - Xcc-8004.4920.1 0.42 -0.2
4,681,962 - Xcc-8004.4920.1 0.42 +1.1
4,682,132 + Xcc-8004.4920.1 0.57 +0.9
4,682,132 + Xcc-8004.4920.1 0.57 +0.1
4,682,132 + Xcc-8004.4920.1 0.57 +0.2
4,682,211 + Xcc-8004.4920.1 0.64 +0.6
4,682,211 + Xcc-8004.4920.1 0.64 -0.8
4,682,212 - Xcc-8004.4920.1 0.64 -1.5
4,682,213 + Xcc-8004.4920.1 0.64 -1.4
4,682,213 + Xcc-8004.4920.1 0.64 +0.8
4,682,213 + Xcc-8004.4920.1 0.64 +2.2
4,682,213 + Xcc-8004.4920.1 0.64 +0.8
4,682,213 + Xcc-8004.4920.1 0.64 +0.2
4,682,213 + Xcc-8004.4920.1 0.64 -1.0
4,682,213 + Xcc-8004.4920.1 0.64 +0.0
4,682,213 + Xcc-8004.4920.1 0.64 +1.1
4,682,213 + Xcc-8004.4920.1 0.64 +1.8
4,682,213 + Xcc-8004.4920.1 0.64 +1.8
4,682,214 - Xcc-8004.4920.1 0.64 +1.1
4,682,214 - Xcc-8004.4920.1 0.64 -0.9
4,682,214 - Xcc-8004.4920.1 0.64 +0.7
4,682,214 - Xcc-8004.4920.1 0.64 -1.1
4,682,279 + Xcc-8004.4920.1 0.70 -0.8
4,682,279 + Xcc-8004.4920.1 0.70 +0.8
4,682,279 + Xcc-8004.4920.1 0.70 +0.0
4,682,279 + Xcc-8004.4920.1 0.70 -0.4
4,682,280 - Xcc-8004.4920.1 0.70 +1.0
4,682,280 - Xcc-8004.4920.1 0.70 +2.4
4,682,280 - Xcc-8004.4920.1 0.70 -1.4
4,682,280 - Xcc-8004.4920.1 0.70 +2.3
4,682,280 - Xcc-8004.4920.1 0.70 -1.6
4,682,318 + Xcc-8004.4920.1 0.74 -0.7
4,682,318 + Xcc-8004.4920.1 0.74 +2.4
4,682,318 + Xcc-8004.4920.1 0.74 -2.4
4,682,423 - Xcc-8004.4920.1 0.83 +0.2
4,682,423 - Xcc-8004.4920.1 0.83 +0.5
4,682,423 - Xcc-8004.4920.1 0.83 +1.4
4,682,498 + Xcc-8004.4920.1 0.90 +2.1
4,682,499 - Xcc-8004.4920.1 0.90 +2.1
4,682,499 - Xcc-8004.4920.1 0.90 -0.9
4,682,499 - Xcc-8004.4920.1 0.90 -0.5
4,682,624 + -0.8
4,682,624 + +0.8
4,682,624 + +0.1
4,682,625 - -0.1
4,682,671 + -1.5
4,682,671 + +0.8
4,682,671 + -0.0
4,682,671 + +0.4
4,682,671 + -0.6
4,682,671 + -1.2
4,682,672 - -0.5
4,682,672 - -1.4
4,682,672 - -0.1
4,682,672 - -0.1
4,682,672 - -1.2
4,682,672 - +1.0
4,682,672 - +0.3
4,682,845 - Xcc-8004.4922.1 0.21 -0.3
4,683,167 + Xcc-8004.4922.1 0.52 -1.3
4,683,167 + Xcc-8004.4922.1 0.52 -1.3
4,683,167 + Xcc-8004.4922.1 0.52 +0.5
4,683,167 + Xcc-8004.4922.1 0.52 -1.3
4,683,167 + Xcc-8004.4922.1 0.52 -1.0
4,683,167 + Xcc-8004.4922.1 0.52 -0.5
4,683,168 - Xcc-8004.4922.1 0.52 -1.5
4,683,168 - Xcc-8004.4922.1 0.52 -2.9
4,683,350 + Xcc-8004.4922.1 0.69 +1.0
4,683,350 + Xcc-8004.4922.1 0.69 +2.8
4,683,350 + Xcc-8004.4922.1 0.69 -2.8
4,683,350 + Xcc-8004.4922.1 0.69 -1.6
4,683,350 + Xcc-8004.4922.1 0.69 +0.8
4,683,350 + Xcc-8004.4922.1 0.69 -0.0
4,683,351 - Xcc-8004.4922.1 0.69 +1.1
4,683,351 - Xcc-8004.4922.1 0.69 -2.4
4,683,351 - Xcc-8004.4922.1 0.69 -0.4
4,683,351 - Xcc-8004.4922.1 0.69 -0.9
4,683,351 - Xcc-8004.4922.1 0.69 -0.5
4,683,351 - Xcc-8004.4922.1 0.69 +0.4
4,683,351 - Xcc-8004.4922.1 0.69 +1.2
4,683,425 + Xcc-8004.4922.1 0.76 +0.8
4,683,425 + Xcc-8004.4922.1 0.76 +0.5
4,683,426 - Xcc-8004.4922.1 0.76 -1.0
4,683,426 - Xcc-8004.4922.1 0.76 +0.2
4,683,426 - Xcc-8004.4922.1 0.76 -2.5

Or see this region's nucleotide sequence