Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4007.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4006.1 and Xcc-8004.4007.1 are separated by 24 nucleotidesXcc-8004.4007.1 and Xcc-8004.4008.1 are separated by 4 nucleotidesXcc-8004.4008.1 and Xcc-8004.4009.1 overlap by 8 nucleotides Xcc-8004.4006.1: Xcc-8004.4006.1 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 3,880,049 to 3,881,905 Xcc-8004.4006.1 Xcc-8004.4007.1: Xcc-8004.4007.1 - FIG022979: MoxR-like ATPases, at 3,881,930 to 3,882,883 Xcc-8004.4007.1 Xcc-8004.4008.1: Xcc-8004.4008.1 - FIG002343: hypothetical protein, at 3,882,888 to 3,883,844 Xcc-8004.4008.1 Xcc-8004.4009.1: Xcc-8004.4009.1 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 3,883,837 to 3,885,786 Xcc-8004.4009.1 Position (kb) 3881 3882 3883Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3880.968 kb on + strand, within Xcc-8004.4006.1at 3880.968 kb on + strand, within Xcc-8004.4006.1at 3880.969 kb on - strand, within Xcc-8004.4006.1at 3881.047 kb on + strand, within Xcc-8004.4006.1at 3881.048 kb on - strand, within Xcc-8004.4006.1at 3881.068 kb on - strand, within Xcc-8004.4006.1at 3881.068 kb on - strand, within Xcc-8004.4006.1at 3881.219 kb on + strand, within Xcc-8004.4006.1at 3881.220 kb on - strand, within Xcc-8004.4006.1at 3881.220 kb on - strand, within Xcc-8004.4006.1at 3881.220 kb on - strand, within Xcc-8004.4006.1at 3881.220 kb on - strand, within Xcc-8004.4006.1at 3881.294 kb on + strand, within Xcc-8004.4006.1at 3881.294 kb on + strand, within Xcc-8004.4006.1at 3881.294 kb on + strand, within Xcc-8004.4006.1at 3881.294 kb on + strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.295 kb on - strand, within Xcc-8004.4006.1at 3881.398 kb on - strand, within Xcc-8004.4006.1at 3881.561 kb on + strand, within Xcc-8004.4006.1at 3881.561 kb on + strand, within Xcc-8004.4006.1at 3881.562 kb on - strand, within Xcc-8004.4006.1at 3881.562 kb on - strand, within Xcc-8004.4006.1at 3881.681 kb on + strand, within Xcc-8004.4006.1at 3881.681 kb on + strand, within Xcc-8004.4006.1at 3881.681 kb on + strand, within Xcc-8004.4006.1at 3881.682 kb on - strand, within Xcc-8004.4006.1at 3881.682 kb on - strand, within Xcc-8004.4006.1at 3881.682 kb on - strand, within Xcc-8004.4006.1at 3881.682 kb on - strand, within Xcc-8004.4006.1at 3881.682 kb on - strand, within Xcc-8004.4006.1at 3881.748 kb on + strandat 3881.748 kb on + strandat 3881.748 kb on + strandat 3881.782 kb on - strandat 3881.825 kb on + strandat 3881.825 kb on + strandat 3881.825 kb on + strandat 3881.826 kb on - strandat 3881.826 kb on - strandat 3881.826 kb on - strandat 3881.826 kb on - strandat 3881.826 kb on - strandat 3881.826 kb on - strandat 3881.918 kb on + strandat 3881.918 kb on + strandat 3881.918 kb on + strandat 3881.961 kb on + strandat 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.180 kb on + strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.181 kb on - strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.212 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.632 kb on + strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.633 kb on - strand, within Xcc-8004.4007.1at 3882.655 kb on + strand, within Xcc-8004.4007.1at 3882.732 kb on - strand, within Xcc-8004.4007.1at 3882.870 kb on + strandat 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.987 kb on + strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3882.988 kb on - strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.059 kb on + strand, within Xcc-8004.4008.1at 3883.060 kb on - strand, within Xcc-8004.4008.1at 3883.296 kb on + strand, within Xcc-8004.4008.1at 3883.297 kb on - strand, within Xcc-8004.4008.1at 3883.297 kb on - strand, within Xcc-8004.4008.1at 3883.441 kb on - strand, within Xcc-8004.4008.1at 3883.545 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.620 kb on + strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.621 kb on - strand, within Xcc-8004.4008.1at 3883.680 kb on + strand, within Xcc-8004.4008.1at 3883.828 kb on + strandat 3883.828 kb on + strandat 3883.829 kb on - strandat 3883.831 kb on + strandat 3883.831 kb on + strandat 3883.848 kb on + strandat 3883.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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3,880,968 + Xcc-8004.4006.1 0.49 -0.1
3,880,968 + Xcc-8004.4006.1 0.49 -0.2
3,880,969 - Xcc-8004.4006.1 0.50 -0.1
3,881,047 + Xcc-8004.4006.1 0.54 +0.9
3,881,048 - Xcc-8004.4006.1 0.54 +1.7
3,881,068 - Xcc-8004.4006.1 0.55 -1.2
3,881,068 - Xcc-8004.4006.1 0.55 +0.3
3,881,219 + Xcc-8004.4006.1 0.63 +0.7
3,881,220 - Xcc-8004.4006.1 0.63 -0.6
3,881,220 - Xcc-8004.4006.1 0.63 -1.4
3,881,220 - Xcc-8004.4006.1 0.63 +1.0
3,881,220 - Xcc-8004.4006.1 0.63 +1.5
3,881,294 + Xcc-8004.4006.1 0.67 +0.9
3,881,294 + Xcc-8004.4006.1 0.67 -0.7
3,881,294 + Xcc-8004.4006.1 0.67 -0.2
3,881,294 + Xcc-8004.4006.1 0.67 +1.7
3,881,295 - Xcc-8004.4006.1 0.67 +2.3
3,881,295 - Xcc-8004.4006.1 0.67 +0.3
3,881,295 - Xcc-8004.4006.1 0.67 -0.4
3,881,295 - Xcc-8004.4006.1 0.67 -0.9
3,881,295 - Xcc-8004.4006.1 0.67 +0.8
3,881,295 - Xcc-8004.4006.1 0.67 -1.0
3,881,398 - Xcc-8004.4006.1 0.73 +0.2
3,881,561 + Xcc-8004.4006.1 0.81 +1.1
3,881,561 + Xcc-8004.4006.1 0.81 -0.0
3,881,562 - Xcc-8004.4006.1 0.81 -1.1
3,881,562 - Xcc-8004.4006.1 0.81 -0.2
3,881,681 + Xcc-8004.4006.1 0.88 +0.1
3,881,681 + Xcc-8004.4006.1 0.88 -0.5
3,881,681 + Xcc-8004.4006.1 0.88 -0.1
3,881,682 - Xcc-8004.4006.1 0.88 -1.1
3,881,682 - Xcc-8004.4006.1 0.88 +0.1
3,881,682 - Xcc-8004.4006.1 0.88 -0.4
3,881,682 - Xcc-8004.4006.1 0.88 -0.7
3,881,682 - Xcc-8004.4006.1 0.88 +2.3
3,881,748 + -0.4
3,881,748 + -1.1
3,881,748 + -0.1
3,881,782 - +0.1
3,881,825 + -0.1
3,881,825 + +1.9
3,881,825 + -0.4
3,881,826 - -0.1
3,881,826 - -0.6
3,881,826 - +0.4
3,881,826 - -0.0
3,881,826 - +0.2
3,881,826 - -1.1
3,881,918 + -1.8
3,881,918 + +0.7
3,881,918 + -0.3
3,881,961 + +1.3
3,882,180 + Xcc-8004.4007.1 0.26 +1.3
3,882,180 + Xcc-8004.4007.1 0.26 -0.6
3,882,180 + Xcc-8004.4007.1 0.26 -0.2
3,882,180 + Xcc-8004.4007.1 0.26 -1.5
3,882,180 + Xcc-8004.4007.1 0.26 -1.5
3,882,180 + Xcc-8004.4007.1 0.26 +0.5
3,882,181 - Xcc-8004.4007.1 0.26 +1.0
3,882,181 - Xcc-8004.4007.1 0.26 -0.9
3,882,181 - Xcc-8004.4007.1 0.26 +0.2
3,882,181 - Xcc-8004.4007.1 0.26 -0.6
3,882,181 - Xcc-8004.4007.1 0.26 -1.0
3,882,212 + Xcc-8004.4007.1 0.30 +0.9
3,882,212 + Xcc-8004.4007.1 0.30 -0.4
3,882,212 + Xcc-8004.4007.1 0.30 +0.6
3,882,632 + Xcc-8004.4007.1 0.74 +0.3
3,882,632 + Xcc-8004.4007.1 0.74 -1.6
3,882,632 + Xcc-8004.4007.1 0.74 +0.5
3,882,632 + Xcc-8004.4007.1 0.74 +3.3
3,882,632 + Xcc-8004.4007.1 0.74 -0.0
3,882,632 + Xcc-8004.4007.1 0.74 -2.2
3,882,632 + Xcc-8004.4007.1 0.74 -1.7
3,882,632 + Xcc-8004.4007.1 0.74 -1.1
3,882,632 + Xcc-8004.4007.1 0.74 +0.4
3,882,632 + Xcc-8004.4007.1 0.74 +1.3
3,882,632 + Xcc-8004.4007.1 0.74 +1.3
3,882,632 + Xcc-8004.4007.1 0.74 -1.2
3,882,632 + Xcc-8004.4007.1 0.74 +0.6
3,882,632 + Xcc-8004.4007.1 0.74 +0.5
3,882,632 + Xcc-8004.4007.1 0.74 -0.4
3,882,632 + Xcc-8004.4007.1 0.74 -0.9
3,882,632 + Xcc-8004.4007.1 0.74 +2.7
3,882,632 + Xcc-8004.4007.1 0.74 +1.3
3,882,632 + Xcc-8004.4007.1 0.74 +0.2
3,882,632 + Xcc-8004.4007.1 0.74 -0.3
3,882,633 - Xcc-8004.4007.1 0.74 +0.4
3,882,633 - Xcc-8004.4007.1 0.74 -0.6
3,882,633 - Xcc-8004.4007.1 0.74 -0.3
3,882,633 - Xcc-8004.4007.1 0.74 -1.1
3,882,633 - Xcc-8004.4007.1 0.74 -1.1
3,882,633 - Xcc-8004.4007.1 0.74 -0.5
3,882,633 - Xcc-8004.4007.1 0.74 +1.0
3,882,633 - Xcc-8004.4007.1 0.74 +0.1
3,882,633 - Xcc-8004.4007.1 0.74 +0.6
3,882,633 - Xcc-8004.4007.1 0.74 +0.1
3,882,633 - Xcc-8004.4007.1 0.74 -1.2
3,882,633 - Xcc-8004.4007.1 0.74 +1.1
3,882,633 - Xcc-8004.4007.1 0.74 -0.1
3,882,633 - Xcc-8004.4007.1 0.74 -1.8
3,882,633 - Xcc-8004.4007.1 0.74 +0.7
3,882,633 - Xcc-8004.4007.1 0.74 -3.7
3,882,633 - Xcc-8004.4007.1 0.74 +0.4
3,882,633 - Xcc-8004.4007.1 0.74 +0.0
3,882,633 - Xcc-8004.4007.1 0.74 +1.2
3,882,633 - Xcc-8004.4007.1 0.74 +0.6
3,882,633 - Xcc-8004.4007.1 0.74 +0.7
3,882,655 + Xcc-8004.4007.1 0.76 +0.7
3,882,732 - Xcc-8004.4007.1 0.84 -0.3
3,882,870 + +1.3
3,882,987 + Xcc-8004.4008.1 0.10 +1.7
3,882,987 + Xcc-8004.4008.1 0.10 +0.7
3,882,987 + Xcc-8004.4008.1 0.10 -2.0
3,882,987 + Xcc-8004.4008.1 0.10 -0.1
3,882,987 + Xcc-8004.4008.1 0.10 +1.5
3,882,987 + Xcc-8004.4008.1 0.10 +0.2
3,882,987 + Xcc-8004.4008.1 0.10 -1.1
3,882,987 + Xcc-8004.4008.1 0.10 -0.3
3,882,987 + Xcc-8004.4008.1 0.10 -0.4
3,882,987 + Xcc-8004.4008.1 0.10 +2.0
3,882,988 - Xcc-8004.4008.1 0.10 -0.9
3,882,988 - Xcc-8004.4008.1 0.10 +0.2
3,882,988 - Xcc-8004.4008.1 0.10 +0.3
3,882,988 - Xcc-8004.4008.1 0.10 -0.3
3,882,988 - Xcc-8004.4008.1 0.10 +1.3
3,883,059 + Xcc-8004.4008.1 0.18 -1.7
3,883,059 + Xcc-8004.4008.1 0.18 +0.1
3,883,059 + Xcc-8004.4008.1 0.18 +0.1
3,883,059 + Xcc-8004.4008.1 0.18 -3.4
3,883,059 + Xcc-8004.4008.1 0.18 -0.4
3,883,059 + Xcc-8004.4008.1 0.18 -2.3
3,883,059 + Xcc-8004.4008.1 0.18 -0.5
3,883,060 - Xcc-8004.4008.1 0.18 +1.3
3,883,296 + Xcc-8004.4008.1 0.43 +1.1
3,883,297 - Xcc-8004.4008.1 0.43 +0.8
3,883,297 - Xcc-8004.4008.1 0.43 -0.4
3,883,441 - Xcc-8004.4008.1 0.58 -0.7
3,883,545 + Xcc-8004.4008.1 0.69 -0.1
3,883,620 + Xcc-8004.4008.1 0.76 +0.4
3,883,620 + Xcc-8004.4008.1 0.76 +0.4
3,883,620 + Xcc-8004.4008.1 0.76 +0.7
3,883,621 - Xcc-8004.4008.1 0.77 -0.1
3,883,621 - Xcc-8004.4008.1 0.77 +1.3
3,883,621 - Xcc-8004.4008.1 0.77 +1.3
3,883,621 - Xcc-8004.4008.1 0.77 +0.0
3,883,621 - Xcc-8004.4008.1 0.77 -0.7
3,883,680 + Xcc-8004.4008.1 0.83 -1.2
3,883,828 + +0.9
3,883,828 + +0.0
3,883,829 - -1.0
3,883,831 + -0.5
3,883,831 + +0.2
3,883,848 + +1.3
3,883,883 + +1.0

Or see this region's nucleotide sequence