Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.364.1 and Xcc-8004.365.1 are separated by 312 nucleotides Xcc-8004.365.1 and Xcc-8004.366.1 are separated by 3 nucleotides Xcc-8004.366.1 and Xcc-8004.367.1 are separated by 256 nucleotides Xcc-8004.367.1 and Xcc-8004.368.1 are separated by 8 nucleotides
Xcc-8004.364.1: Xcc-8004.364.1 - hypothetical protein, at 348,561 to 349,832
Xcc-8004.364.1
Xcc-8004.365.1: Xcc-8004.365.1 - Transcriptional regulator, LysR family, at 350,145 to 351,038
Xcc-8004.365.1
Xcc-8004.366.1: Xcc-8004.366.1 - hypothetical protein, at 351,042 to 351,332
Xcc-8004.366.1
Xcc-8004.367.1: Xcc-8004.367.1 - putative; ORF located using Glimmer/Genemark, at 351,589 to 351,954
Xcc-8004.367.1
Xcc-8004.368.1: Xcc-8004.368.1 - putative; ORF located using Glimmer/Genemark, at 351,963 to 352,130
Xcc-8004.368.1
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.284 kb on + strand, within Xcc-8004.364.1 at 349.285 kb on - strand, within Xcc-8004.364.1 at 349.285 kb on - strand, within Xcc-8004.364.1 at 349.535 kb on - strand, within Xcc-8004.364.1 at 349.610 kb on - strand, within Xcc-8004.364.1 at 349.941 kb on - strand at 349.941 kb on - strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.942 kb on + strand at 349.943 kb on - strand at 349.943 kb on - strand at 350.050 kb on + strand at 350.051 kb on - strand at 350.111 kb on + strand at 350.111 kb on + strand at 350.111 kb on + strand at 350.112 kb on - strand at 350.112 kb on - strand at 350.112 kb on - strand at 350.112 kb on - strand at 350.112 kb on - strand at 350.451 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.754 kb on + strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.755 kb on - strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.829 kb on + strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 350.830 kb on - strand, within Xcc-8004.365.1 at 351.030 kb on - strand at 351.082 kb on - strand, within Xcc-8004.366.1 at 351.111 kb on - strand, within Xcc-8004.366.1 at 351.111 kb on - strand, within Xcc-8004.366.1 at 351.177 kb on - strand, within Xcc-8004.366.1 at 351.186 kb on + strand, within Xcc-8004.366.1 at 351.186 kb on + strand, within Xcc-8004.366.1 at 351.187 kb on - strand, within Xcc-8004.366.1 at 351.187 kb on - strand, within Xcc-8004.366.1 at 351.528 kb on - strand at 351.669 kb on + strand, within Xcc-8004.367.1 at 351.669 kb on + strand, within Xcc-8004.367.1 at 351.715 kb on - strand, within Xcc-8004.367.1 at 351.778 kb on + strand, within Xcc-8004.367.1 at 351.779 kb on - strand, within Xcc-8004.367.1 at 351.779 kb on - strand, within Xcc-8004.367.1 at 351.856 kb on - strand, within Xcc-8004.367.1 at 351.856 kb on - strand, within Xcc-8004.367.1 at 351.856 kb on - strand, within Xcc-8004.367.1 at 351.856 kb on - strand, within Xcc-8004.367.1 at 351.856 kb on - strand, within Xcc-8004.367.1 at 351.900 kb on + strand, within Xcc-8004.367.1 at 351.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 349,284 + Xcc-8004.364.1 0.57 +0.4 349,285 - Xcc-8004.364.1 0.57 +1.5 349,285 - Xcc-8004.364.1 0.57 -1.3 349,535 - Xcc-8004.364.1 0.77 -0.5 349,610 - Xcc-8004.364.1 0.82 -0.4 349,941 - -0.7 349,941 - +1.3 349,942 + +0.9 349,942 + +1.2 349,942 + +0.0 349,942 + +0.9 349,942 + -0.2 349,942 + +0.9 349,942 + -1.3 349,942 + -1.1 349,942 + -1.3 349,943 - +1.0 349,943 - -0.1 350,050 + +1.7 350,051 - -0.1 350,111 + +0.5 350,111 + -1.1 350,111 + -1.1 350,112 - -0.6 350,112 - +0.1 350,112 - +0.5 350,112 - +1.3 350,112 - -0.1 350,451 + Xcc-8004.365.1 0.34 +0.5 350,754 + Xcc-8004.365.1 0.68 +0.3 350,754 + Xcc-8004.365.1 0.68 -0.3 350,754 + Xcc-8004.365.1 0.68 -2.0 350,754 + Xcc-8004.365.1 0.68 +1.0 350,754 + Xcc-8004.365.1 0.68 +0.9 350,754 + Xcc-8004.365.1 0.68 -1.0 350,754 + Xcc-8004.365.1 0.68 +1.3 350,754 + Xcc-8004.365.1 0.68 -0.4 350,755 - Xcc-8004.365.1 0.68 +1.4 350,755 - Xcc-8004.365.1 0.68 +0.5 350,755 - Xcc-8004.365.1 0.68 -0.7 350,755 - Xcc-8004.365.1 0.68 -1.5 350,755 - Xcc-8004.365.1 0.68 +0.3 350,755 - Xcc-8004.365.1 0.68 -1.5 350,829 + Xcc-8004.365.1 0.77 +0.9 350,829 + Xcc-8004.365.1 0.77 +0.7 350,829 + Xcc-8004.365.1 0.77 +0.9 350,829 + Xcc-8004.365.1 0.77 -0.3 350,829 + Xcc-8004.365.1 0.77 +0.9 350,829 + Xcc-8004.365.1 0.77 +0.5 350,829 + Xcc-8004.365.1 0.77 -1.3 350,829 + Xcc-8004.365.1 0.77 +0.5 350,829 + Xcc-8004.365.1 0.77 -0.5 350,830 - Xcc-8004.365.1 0.77 -0.4 350,830 - Xcc-8004.365.1 0.77 +1.1 350,830 - Xcc-8004.365.1 0.77 +0.2 350,830 - Xcc-8004.365.1 0.77 +0.0 350,830 - Xcc-8004.365.1 0.77 +0.5 350,830 - Xcc-8004.365.1 0.77 +0.1 350,830 - Xcc-8004.365.1 0.77 +0.3 350,830 - Xcc-8004.365.1 0.77 +2.4 350,830 - Xcc-8004.365.1 0.77 +0.7 350,830 - Xcc-8004.365.1 0.77 +0.9 350,830 - Xcc-8004.365.1 0.77 +0.9 350,830 - Xcc-8004.365.1 0.77 +1.9 351,030 - +0.1 351,082 - Xcc-8004.366.1 0.14 -0.2 351,111 - Xcc-8004.366.1 0.24 +1.2 351,111 - Xcc-8004.366.1 0.24 -0.3 351,177 - Xcc-8004.366.1 0.46 +0.3 351,186 + Xcc-8004.366.1 0.49 -0.3 351,186 + Xcc-8004.366.1 0.49 +2.0 351,187 - Xcc-8004.366.1 0.50 -1.1 351,187 - Xcc-8004.366.1 0.50 +0.8 351,528 - +0.7 351,669 + Xcc-8004.367.1 0.22 +2.4 351,669 + Xcc-8004.367.1 0.22 -1.7 351,715 - Xcc-8004.367.1 0.34 +1.5 351,778 + Xcc-8004.367.1 0.52 -0.4 351,779 - Xcc-8004.367.1 0.52 -0.4 351,779 - Xcc-8004.367.1 0.52 +0.4 351,856 - Xcc-8004.367.1 0.73 -0.7 351,856 - Xcc-8004.367.1 0.73 +0.1 351,856 - Xcc-8004.367.1 0.73 -0.1 351,856 - Xcc-8004.367.1 0.73 -1.0 351,856 - Xcc-8004.367.1 0.73 -1.0 351,900 + Xcc-8004.367.1 0.85 +2.1 351,965 - -0.8
Or see this region's nucleotide sequence