Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3637.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3634.1 and Xcc-8004.3635.1 overlap by 4 nucleotidesXcc-8004.3635.1 and Xcc-8004.3637.1 are separated by 113 nucleotidesXcc-8004.3637.1 and Xcc-8004.3639.1 are separated by 388 nucleotidesXcc-8004.3639.1 and Xcc-8004.3640.1 are separated by 13 nucleotides Xcc-8004.3634.1: Xcc-8004.3634.1 - FIG01111117: hypothetical protein, at 3,518,337 to 3,518,870 Xcc-8004.3634.1 Xcc-8004.3635.1: Xcc-8004.3635.1 - RNA polymerase ECF-type sigma factor, at 3,518,867 to 3,519,502 Xcc-8004.3635.1 Xcc-8004.3637.1: Xcc-8004.3637.1 - hypothetical protein, at 3,519,616 to 3,520,152 Xcc-8004.3637.1 Xcc-8004.3639.1: Xcc-8004.3639.1 - Small-conductance mechanosensitive channel, at 3,520,541 to 3,521,107 Xcc-8004.3639.1 Xcc-8004.3640.1: Xcc-8004.3640.1 - Hypothetical Zinc-finger containing protein, at 3,521,121 to 3,521,387 Xcc-8004.3640.1 Position (kb) 3519 3520 3521Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.631 kb on - strand, within Xcc-8004.3634.1at 3518.870 kb on + strandat 3518.870 kb on + strandat 3518.871 kb on - strandat 3518.871 kb on - strandat 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.337 kb on - strand, within Xcc-8004.3635.1at 3519.337 kb on - strand, within Xcc-8004.3635.1at 3519.349 kb on - strand, within Xcc-8004.3635.1at 3519.349 kb on - strand, within Xcc-8004.3635.1at 3519.445 kb on + strandat 3519.454 kb on + strandat 3519.454 kb on + strandat 3519.455 kb on - strandat 3519.489 kb on - strandat 3519.489 kb on - strandat 3519.497 kb on + strandat 3519.497 kb on + strandat 3519.497 kb on + strandat 3519.498 kb on - strandat 3519.505 kb on + strandat 3519.506 kb on - strandat 3519.506 kb on - strandat 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.705 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.772 kb on + strand, within Xcc-8004.3637.1at 3519.773 kb on - strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.807 kb on - strand, within Xcc-8004.3637.1at 3519.968 kb on + strand, within Xcc-8004.3637.1at 3519.968 kb on + strand, within Xcc-8004.3637.1at 3519.969 kb on - strand, within Xcc-8004.3637.1at 3519.969 kb on - strand, within Xcc-8004.3637.1at 3519.975 kb on - strand, within Xcc-8004.3637.1at 3520.081 kb on - strand, within Xcc-8004.3637.1at 3520.123 kb on + strandat 3520.124 kb on - strandat 3520.139 kb on + strandat 3520.139 kb on + strandat 3520.139 kb on + strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.140 kb on - strandat 3520.303 kb on - strandat 3520.303 kb on - strandat 3520.322 kb on - strandat 3520.435 kb on + strandat 3520.435 kb on + strandat 3520.435 kb on + strandat 3520.472 kb on + strandat 3520.480 kb on + strandat 3520.480 kb on + strandat 3520.481 kb on - strandat 3520.485 kb on + strandat 3520.485 kb on + strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.486 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.500 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.550 kb on - strandat 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.682 kb on + strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.683 kb on - strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.752 kb on + strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.753 kb on - strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.988 kb on + strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1at 3520.989 kb on - strand, within Xcc-8004.3639.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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3,518,630 + Xcc-8004.3634.1 0.55 +0.9
3,518,630 + Xcc-8004.3634.1 0.55 +0.3
3,518,630 + Xcc-8004.3634.1 0.55 -0.9
3,518,630 + Xcc-8004.3634.1 0.55 -0.5
3,518,630 + Xcc-8004.3634.1 0.55 -1.2
3,518,630 + Xcc-8004.3634.1 0.55 -0.7
3,518,631 - Xcc-8004.3634.1 0.55 +1.1
3,518,870 + +0.8
3,518,870 + +1.6
3,518,871 - +2.2
3,518,871 - +0.3
3,519,312 + Xcc-8004.3635.1 0.70 +1.6
3,519,312 + Xcc-8004.3635.1 0.70 +0.5
3,519,313 - Xcc-8004.3635.1 0.70 +1.3
3,519,313 - Xcc-8004.3635.1 0.70 +0.0
3,519,313 - Xcc-8004.3635.1 0.70 -0.4
3,519,313 - Xcc-8004.3635.1 0.70 -0.4
3,519,336 + Xcc-8004.3635.1 0.74 +0.2
3,519,336 + Xcc-8004.3635.1 0.74 +0.6
3,519,336 + Xcc-8004.3635.1 0.74 +0.9
3,519,337 - Xcc-8004.3635.1 0.74 -0.9
3,519,337 - Xcc-8004.3635.1 0.74 +0.9
3,519,349 - Xcc-8004.3635.1 0.76 +0.6
3,519,349 - Xcc-8004.3635.1 0.76 -0.1
3,519,445 + +1.4
3,519,454 + +0.5
3,519,454 + +1.2
3,519,455 - -0.4
3,519,489 - +0.8
3,519,489 - -0.7
3,519,497 + -1.0
3,519,497 + +1.3
3,519,497 + -0.4
3,519,498 - -0.4
3,519,505 + -1.0
3,519,506 - -0.4
3,519,506 - +0.4
3,519,630 + -0.6
3,519,630 + +1.2
3,519,630 + +0.1
3,519,695 + Xcc-8004.3637.1 0.15 +2.9
3,519,695 + Xcc-8004.3637.1 0.15 +0.7
3,519,695 + Xcc-8004.3637.1 0.15 +0.0
3,519,695 + Xcc-8004.3637.1 0.15 +0.0
3,519,695 + Xcc-8004.3637.1 0.15 -2.7
3,519,696 - Xcc-8004.3637.1 0.15 -0.1
3,519,696 - Xcc-8004.3637.1 0.15 +0.6
3,519,696 - Xcc-8004.3637.1 0.15 +1.3
3,519,696 - Xcc-8004.3637.1 0.15 -0.4
3,519,696 - Xcc-8004.3637.1 0.15 +0.2
3,519,696 - Xcc-8004.3637.1 0.15 -0.2
3,519,696 - Xcc-8004.3637.1 0.15 -1.1
3,519,696 - Xcc-8004.3637.1 0.15 +2.2
3,519,696 - Xcc-8004.3637.1 0.15 +0.9
3,519,696 - Xcc-8004.3637.1 0.15 +0.0
3,519,705 + Xcc-8004.3637.1 0.17 +1.5
3,519,754 + Xcc-8004.3637.1 0.26 -0.4
3,519,754 + Xcc-8004.3637.1 0.26 +0.9
3,519,754 + Xcc-8004.3637.1 0.26 +0.9
3,519,754 + Xcc-8004.3637.1 0.26 +1.9
3,519,754 + Xcc-8004.3637.1 0.26 +0.2
3,519,754 + Xcc-8004.3637.1 0.26 -0.1
3,519,755 - Xcc-8004.3637.1 0.26 -0.4
3,519,755 - Xcc-8004.3637.1 0.26 +0.0
3,519,755 - Xcc-8004.3637.1 0.26 +1.4
3,519,755 - Xcc-8004.3637.1 0.26 -2.0
3,519,755 - Xcc-8004.3637.1 0.26 +0.1
3,519,755 - Xcc-8004.3637.1 0.26 -1.2
3,519,755 - Xcc-8004.3637.1 0.26 +0.8
3,519,755 - Xcc-8004.3637.1 0.26 -0.0
3,519,755 - Xcc-8004.3637.1 0.26 +0.1
3,519,755 - Xcc-8004.3637.1 0.26 -0.2
3,519,755 - Xcc-8004.3637.1 0.26 +0.6
3,519,772 + Xcc-8004.3637.1 0.29 +0.4
3,519,773 - Xcc-8004.3637.1 0.29 +0.6
3,519,806 + Xcc-8004.3637.1 0.35 +0.1
3,519,806 + Xcc-8004.3637.1 0.35 -0.4
3,519,806 + Xcc-8004.3637.1 0.35 +0.3
3,519,807 - Xcc-8004.3637.1 0.36 +1.6
3,519,968 + Xcc-8004.3637.1 0.66 +2.1
3,519,968 + Xcc-8004.3637.1 0.66 +0.6
3,519,969 - Xcc-8004.3637.1 0.66 +1.1
3,519,969 - Xcc-8004.3637.1 0.66 +0.2
3,519,975 - Xcc-8004.3637.1 0.67 -0.1
3,520,081 - Xcc-8004.3637.1 0.87 -0.4
3,520,123 + +0.6
3,520,124 - +0.3
3,520,139 + -0.8
3,520,139 + -0.1
3,520,139 + +0.5
3,520,140 - +1.2
3,520,140 - -1.9
3,520,140 - +0.6
3,520,140 - +0.3
3,520,140 - +1.0
3,520,303 - -0.2
3,520,303 - -0.3
3,520,322 - +0.1
3,520,435 + -0.2
3,520,435 + -0.4
3,520,435 + +0.4
3,520,472 + +0.0
3,520,480 + +0.6
3,520,480 + -0.7
3,520,481 - +0.8
3,520,485 + +1.9
3,520,485 + -0.6
3,520,486 - -1.0
3,520,486 - -1.2
3,520,486 - -0.2
3,520,486 - -0.3
3,520,500 - +0.6
3,520,500 - +1.4
3,520,500 - -0.6
3,520,500 - +0.8
3,520,500 - -0.8
3,520,550 - +1.9
3,520,550 - +0.6
3,520,550 - -1.1
3,520,550 - +1.2
3,520,682 + Xcc-8004.3639.1 0.25 +0.3
3,520,682 + Xcc-8004.3639.1 0.25 -0.2
3,520,682 + Xcc-8004.3639.1 0.25 -2.0
3,520,683 - Xcc-8004.3639.1 0.25 +1.1
3,520,683 - Xcc-8004.3639.1 0.25 +1.7
3,520,752 + Xcc-8004.3639.1 0.37 +1.1
3,520,752 + Xcc-8004.3639.1 0.37 +0.9
3,520,753 - Xcc-8004.3639.1 0.37 +0.2
3,520,753 - Xcc-8004.3639.1 0.37 -0.4
3,520,753 - Xcc-8004.3639.1 0.37 -0.0
3,520,753 - Xcc-8004.3639.1 0.37 -2.2
3,520,988 + Xcc-8004.3639.1 0.79 +1.4
3,520,988 + Xcc-8004.3639.1 0.79 +0.9
3,520,988 + Xcc-8004.3639.1 0.79 +0.2
3,520,988 + Xcc-8004.3639.1 0.79 +0.5
3,520,989 - Xcc-8004.3639.1 0.79 +1.7
3,520,989 - Xcc-8004.3639.1 0.79 +0.6
3,520,989 - Xcc-8004.3639.1 0.79 -0.5
3,520,989 - Xcc-8004.3639.1 0.79 -1.6
3,520,989 - Xcc-8004.3639.1 0.79 +0.0
3,520,989 - Xcc-8004.3639.1 0.79 -0.3

Or see this region's nucleotide sequence