Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3488.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3487.1 and Xcc-8004.3488.1 are separated by 22 nucleotidesXcc-8004.3488.1 and Xcc-8004.3489.1 are separated by 112 nucleotides Xcc-8004.3487.1: Xcc-8004.3487.1 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 3,376,398 to 3,378,341 Xcc-8004.3487.1 Xcc-8004.3488.1: Xcc-8004.3488.1 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 3,378,364 to 3,379,104 Xcc-8004.3488.1 Xcc-8004.3489.1: Xcc-8004.3489.1 - FIG01211521: hypothetical protein, at 3,379,217 to 3,381,841 Xcc-8004.3489.1 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3377.549 kb on + strand, within Xcc-8004.3487.1at 3377.729 kb on + strand, within Xcc-8004.3487.1at 3377.729 kb on + strand, within Xcc-8004.3487.1at 3377.729 kb on + strand, within Xcc-8004.3487.1at 3377.729 kb on + strand, within Xcc-8004.3487.1at 3377.730 kb on - strand, within Xcc-8004.3487.1at 3377.730 kb on - strand, within Xcc-8004.3487.1at 3377.760 kb on - strand, within Xcc-8004.3487.1at 3377.761 kb on + strand, within Xcc-8004.3487.1at 3377.761 kb on + strand, within Xcc-8004.3487.1at 3377.761 kb on + strand, within Xcc-8004.3487.1at 3377.761 kb on + strand, within Xcc-8004.3487.1at 3377.761 kb on + strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.762 kb on - strand, within Xcc-8004.3487.1at 3377.878 kb on + strand, within Xcc-8004.3487.1at 3377.878 kb on + strand, within Xcc-8004.3487.1at 3377.878 kb on + strand, within Xcc-8004.3487.1at 3377.878 kb on + strand, within Xcc-8004.3487.1at 3377.878 kb on + strand, within Xcc-8004.3487.1at 3377.879 kb on - strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.881 kb on + strand, within Xcc-8004.3487.1at 3377.882 kb on - strand, within Xcc-8004.3487.1at 3377.882 kb on - strand, within Xcc-8004.3487.1at 3378.091 kb on + strand, within Xcc-8004.3487.1at 3378.091 kb on + strand, within Xcc-8004.3487.1at 3378.092 kb on - strand, within Xcc-8004.3487.1at 3378.092 kb on - strand, within Xcc-8004.3487.1at 3378.092 kb on - strand, within Xcc-8004.3487.1at 3378.106 kb on + strand, within Xcc-8004.3487.1at 3378.106 kb on + strand, within Xcc-8004.3487.1at 3378.106 kb on + strand, within Xcc-8004.3487.1at 3378.106 kb on + strand, within Xcc-8004.3487.1at 3378.106 kb on + strand, within Xcc-8004.3487.1at 3378.107 kb on - strand, within Xcc-8004.3487.1at 3378.118 kb on + strand, within Xcc-8004.3487.1at 3378.118 kb on + strand, within Xcc-8004.3487.1at 3378.483 kb on + strand, within Xcc-8004.3488.1at 3378.484 kb on - strand, within Xcc-8004.3488.1at 3378.484 kb on - strand, within Xcc-8004.3488.1at 3378.485 kb on + strand, within Xcc-8004.3488.1at 3378.485 kb on + strand, within Xcc-8004.3488.1at 3378.485 kb on + strand, within Xcc-8004.3488.1at 3378.485 kb on + strand, within Xcc-8004.3488.1at 3378.486 kb on - strand, within Xcc-8004.3488.1at 3378.486 kb on - strand, within Xcc-8004.3488.1at 3378.486 kb on - strand, within Xcc-8004.3488.1at 3378.655 kb on + strand, within Xcc-8004.3488.1at 3378.656 kb on - strand, within Xcc-8004.3488.1at 3378.656 kb on - strand, within Xcc-8004.3488.1at 3378.665 kb on + strand, within Xcc-8004.3488.1at 3378.665 kb on + strand, within Xcc-8004.3488.1at 3378.665 kb on + strand, within Xcc-8004.3488.1at 3378.665 kb on + strand, within Xcc-8004.3488.1at 3378.665 kb on + strand, within Xcc-8004.3488.1at 3378.666 kb on - strand, within Xcc-8004.3488.1at 3378.666 kb on - strand, within Xcc-8004.3488.1at 3378.666 kb on - strand, within Xcc-8004.3488.1at 3378.680 kb on + strand, within Xcc-8004.3488.1at 3378.741 kb on - strand, within Xcc-8004.3488.1at 3378.741 kb on - strand, within Xcc-8004.3488.1at 3378.848 kb on + strand, within Xcc-8004.3488.1at 3378.848 kb on + strand, within Xcc-8004.3488.1at 3378.848 kb on + strand, within Xcc-8004.3488.1at 3378.849 kb on - strand, within Xcc-8004.3488.1at 3378.849 kb on - strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.938 kb on + strand, within Xcc-8004.3488.1at 3378.939 kb on - strand, within Xcc-8004.3488.1at 3378.939 kb on - strand, within Xcc-8004.3488.1at 3378.939 kb on - strand, within Xcc-8004.3488.1at 3378.939 kb on - strand, within Xcc-8004.3488.1at 3378.939 kb on - strand, within Xcc-8004.3488.1at 3379.114 kb on + strandat 3379.114 kb on + strandat 3379.115 kb on - strandat 3379.115 kb on - strandat 3379.115 kb on - strandat 3379.115 kb on - strandat 3379.134 kb on + strandat 3379.134 kb on + strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.135 kb on - strandat 3379.179 kb on + strandat 3379.179 kb on + strandat 3379.180 kb on - strandat 3379.180 kb on - strandat 3379.180 kb on - strandat 3379.233 kb on - strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.395 kb on + strandat 3379.396 kb on - strandat 3379.608 kb on + strand, within Xcc-8004.3489.1at 3379.608 kb on + strand, within Xcc-8004.3489.1at 3379.608 kb on + strand, within Xcc-8004.3489.1at 3379.608 kb on + strand, within Xcc-8004.3489.1at 3379.608 kb on + strand, within Xcc-8004.3489.1at 3379.609 kb on - strand, within Xcc-8004.3489.1at 3379.609 kb on - strand, within Xcc-8004.3489.1at 3379.609 kb on - strand, within Xcc-8004.3489.1at 3379.609 kb on - strand, within Xcc-8004.3489.1at 3379.752 kb on + strand, within Xcc-8004.3489.1at 3379.911 kb on + strand, within Xcc-8004.3489.1at 3379.911 kb on + strand, within Xcc-8004.3489.1at 3379.912 kb on - strand, within Xcc-8004.3489.1at 3380.085 kb on - strand, within Xcc-8004.3489.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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3,377,549 + Xcc-8004.3487.1 0.59 -0.4
3,377,729 + Xcc-8004.3487.1 0.68 -0.8
3,377,729 + Xcc-8004.3487.1 0.68 +1.2
3,377,729 + Xcc-8004.3487.1 0.68 -3.5
3,377,729 + Xcc-8004.3487.1 0.68 -2.6
3,377,730 - Xcc-8004.3487.1 0.69 -1.0
3,377,730 - Xcc-8004.3487.1 0.69 -1.0
3,377,760 - Xcc-8004.3487.1 0.70 -1.3
3,377,761 + Xcc-8004.3487.1 0.70 -1.1
3,377,761 + Xcc-8004.3487.1 0.70 -0.5
3,377,761 + Xcc-8004.3487.1 0.70 -1.7
3,377,761 + Xcc-8004.3487.1 0.70 +0.6
3,377,761 + Xcc-8004.3487.1 0.70 +0.3
3,377,762 - Xcc-8004.3487.1 0.70 +0.6
3,377,762 - Xcc-8004.3487.1 0.70 -1.2
3,377,762 - Xcc-8004.3487.1 0.70 -1.9
3,377,762 - Xcc-8004.3487.1 0.70 -0.9
3,377,762 - Xcc-8004.3487.1 0.70 +0.6
3,377,762 - Xcc-8004.3487.1 0.70 -0.1
3,377,762 - Xcc-8004.3487.1 0.70 -0.6
3,377,762 - Xcc-8004.3487.1 0.70 +0.9
3,377,878 + Xcc-8004.3487.1 0.76 -1.0
3,377,878 + Xcc-8004.3487.1 0.76 -0.9
3,377,878 + Xcc-8004.3487.1 0.76 +0.4
3,377,878 + Xcc-8004.3487.1 0.76 +0.2
3,377,878 + Xcc-8004.3487.1 0.76 -0.9
3,377,879 - Xcc-8004.3487.1 0.76 -0.8
3,377,881 + Xcc-8004.3487.1 0.76 -3.3
3,377,881 + Xcc-8004.3487.1 0.76 -1.6
3,377,881 + Xcc-8004.3487.1 0.76 +1.2
3,377,881 + Xcc-8004.3487.1 0.76 -1.3
3,377,881 + Xcc-8004.3487.1 0.76 +0.7
3,377,881 + Xcc-8004.3487.1 0.76 -1.4
3,377,882 - Xcc-8004.3487.1 0.76 -0.2
3,377,882 - Xcc-8004.3487.1 0.76 -0.5
3,378,091 + Xcc-8004.3487.1 0.87 -0.2
3,378,091 + Xcc-8004.3487.1 0.87 +0.2
3,378,092 - Xcc-8004.3487.1 0.87 -1.0
3,378,092 - Xcc-8004.3487.1 0.87 +1.4
3,378,092 - Xcc-8004.3487.1 0.87 -2.0
3,378,106 + Xcc-8004.3487.1 0.88 -0.0
3,378,106 + Xcc-8004.3487.1 0.88 -1.0
3,378,106 + Xcc-8004.3487.1 0.88 -1.0
3,378,106 + Xcc-8004.3487.1 0.88 +0.3
3,378,106 + Xcc-8004.3487.1 0.88 -1.6
3,378,107 - Xcc-8004.3487.1 0.88 -2.7
3,378,118 + Xcc-8004.3487.1 0.88 -1.0
3,378,118 + Xcc-8004.3487.1 0.88 +1.6
3,378,483 + Xcc-8004.3488.1 0.16 -1.7
3,378,484 - Xcc-8004.3488.1 0.16 -1.4
3,378,484 - Xcc-8004.3488.1 0.16 -1.7
3,378,485 + Xcc-8004.3488.1 0.16 -0.7
3,378,485 + Xcc-8004.3488.1 0.16 -1.1
3,378,485 + Xcc-8004.3488.1 0.16 -1.2
3,378,485 + Xcc-8004.3488.1 0.16 -1.1
3,378,486 - Xcc-8004.3488.1 0.16 -0.1
3,378,486 - Xcc-8004.3488.1 0.16 -1.5
3,378,486 - Xcc-8004.3488.1 0.16 -0.1
3,378,655 + Xcc-8004.3488.1 0.39 +1.8
3,378,656 - Xcc-8004.3488.1 0.39 +0.2
3,378,656 - Xcc-8004.3488.1 0.39 -0.6
3,378,665 + Xcc-8004.3488.1 0.41 -1.4
3,378,665 + Xcc-8004.3488.1 0.41 -0.4
3,378,665 + Xcc-8004.3488.1 0.41 -0.8
3,378,665 + Xcc-8004.3488.1 0.41 -1.5
3,378,665 + Xcc-8004.3488.1 0.41 +0.3
3,378,666 - Xcc-8004.3488.1 0.41 +0.9
3,378,666 - Xcc-8004.3488.1 0.41 -0.9
3,378,666 - Xcc-8004.3488.1 0.41 -0.7
3,378,680 + Xcc-8004.3488.1 0.43 +0.1
3,378,741 - Xcc-8004.3488.1 0.51 -0.4
3,378,741 - Xcc-8004.3488.1 0.51 -1.0
3,378,848 + Xcc-8004.3488.1 0.65 -0.7
3,378,848 + Xcc-8004.3488.1 0.65 -2.8
3,378,848 + Xcc-8004.3488.1 0.65 -2.4
3,378,849 - Xcc-8004.3488.1 0.65 +1.2
3,378,849 - Xcc-8004.3488.1 0.65 -0.3
3,378,938 + Xcc-8004.3488.1 0.77 +0.9
3,378,938 + Xcc-8004.3488.1 0.77 -1.7
3,378,938 + Xcc-8004.3488.1 0.77 -0.9
3,378,938 + Xcc-8004.3488.1 0.77 -0.0
3,378,938 + Xcc-8004.3488.1 0.77 -0.8
3,378,938 + Xcc-8004.3488.1 0.77 +0.9
3,378,939 - Xcc-8004.3488.1 0.78 +0.3
3,378,939 - Xcc-8004.3488.1 0.78 -0.4
3,378,939 - Xcc-8004.3488.1 0.78 +1.6
3,378,939 - Xcc-8004.3488.1 0.78 -0.0
3,378,939 - Xcc-8004.3488.1 0.78 -1.3
3,379,114 + +0.8
3,379,114 + +0.3
3,379,115 - -0.0
3,379,115 - -1.6
3,379,115 - -0.7
3,379,115 - -0.6
3,379,134 + -0.0
3,379,134 + -0.2
3,379,135 - -0.7
3,379,135 - -0.3
3,379,135 - -0.3
3,379,135 - -1.3
3,379,135 - -0.6
3,379,135 - -2.0
3,379,135 - -1.1
3,379,135 - +0.6
3,379,135 - +1.6
3,379,135 - +0.4
3,379,179 + -0.6
3,379,179 + +0.1
3,379,180 - +0.6
3,379,180 - -0.7
3,379,180 - -0.7
3,379,233 - +0.3
3,379,395 + -0.5
3,379,395 + -1.5
3,379,395 + -2.4
3,379,395 + +1.3
3,379,395 + -0.6
3,379,395 + -0.2
3,379,395 + +1.2
3,379,395 + -0.0
3,379,396 - -0.3
3,379,608 + Xcc-8004.3489.1 0.15 -1.5
3,379,608 + Xcc-8004.3489.1 0.15 -0.7
3,379,608 + Xcc-8004.3489.1 0.15 -1.2
3,379,608 + Xcc-8004.3489.1 0.15 -0.3
3,379,608 + Xcc-8004.3489.1 0.15 +0.2
3,379,609 - Xcc-8004.3489.1 0.15 -0.7
3,379,609 - Xcc-8004.3489.1 0.15 +0.6
3,379,609 - Xcc-8004.3489.1 0.15 +2.3
3,379,609 - Xcc-8004.3489.1 0.15 -0.6
3,379,752 + Xcc-8004.3489.1 0.20 +1.9
3,379,911 + Xcc-8004.3489.1 0.26 -0.8
3,379,911 + Xcc-8004.3489.1 0.26 -2.7
3,379,912 - Xcc-8004.3489.1 0.26 +1.1
3,380,085 - Xcc-8004.3489.1 0.33 -0.8

Or see this region's nucleotide sequence