Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.194.1 and Xcc-8004.195.1 are separated by 133 nucleotides Xcc-8004.195.1 and Xcc-8004.196.1 are separated by 129 nucleotides Xcc-8004.196.1 and Xcc-8004.197.1 are separated by 204 nucleotides
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Xcc-8004.195.1: Xcc-8004.195.1 - phosphoesterase, putative, at 187,336 to 187,839
Xcc-8004.195.1
Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117
Xcc-8004.196.1
Xcc-8004.197.1: Xcc-8004.197.1 - rhamnogalacturonan acetylesterase, at 189,322 to 190,158
Xcc-8004.197.1
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.990 kb on + strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 187.132 kb on - strand at 187.253 kb on + strand at 187.724 kb on - strand, within Xcc-8004.195.1 at 187.817 kb on + strand at 187.817 kb on + strand at 187.817 kb on + strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.974 kb on + strand at 187.974 kb on + strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 188.110 kb on - strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.316 kb on + strand, within Xcc-8004.196.1 at 188.317 kb on - strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.435 kb on - strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.848 kb on + strand, within Xcc-8004.196.1 at 188.849 kb on - strand, within Xcc-8004.196.1 at 188.849 kb on - strand, within Xcc-8004.196.1 at 188.931 kb on + strand, within Xcc-8004.196.1 at 188.932 kb on - strand, within Xcc-8004.196.1 at 188.932 kb on - strand, within Xcc-8004.196.1 at 189.159 kb on + strand at 189.179 kb on + strand at 189.179 kb on + strand at 189.179 kb on + strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.208 kb on + strand at 189.209 kb on - strand at 189.423 kb on - strand, within Xcc-8004.197.1 at 189.423 kb on - strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.996 kb on + strand, within Xcc-8004.197.1 at 189.996 kb on + strand, within Xcc-8004.197.1 at 189.997 kb on - strand, within Xcc-8004.197.1 at 189.997 kb on - strand, within Xcc-8004.197.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 186,990 + Xcc-8004.194.1 0.86 +0.3 186,991 - Xcc-8004.194.1 0.86 +1.2 186,991 - Xcc-8004.194.1 0.86 +0.6 187,132 - -1.8 187,253 + +0.2 187,724 - Xcc-8004.195.1 0.77 +0.9 187,817 + -0.0 187,817 + +0.7 187,817 + +1.0 187,818 - -0.6 187,818 - -1.1 187,818 - +0.1 187,974 + -0.1 187,974 + -0.3 187,975 - -0.2 187,975 - -1.0 187,975 - +0.6 187,975 - +0.1 187,975 - -0.4 187,975 - -0.3 187,975 - -1.2 188,110 - Xcc-8004.196.1 0.12 +0.6 188,251 + Xcc-8004.196.1 0.25 +0.0 188,251 + Xcc-8004.196.1 0.25 +0.2 188,316 + Xcc-8004.196.1 0.30 +0.2 188,317 - Xcc-8004.196.1 0.30 +0.6 188,335 + Xcc-8004.196.1 0.32 +0.0 188,335 + Xcc-8004.196.1 0.32 +1.0 188,335 + Xcc-8004.196.1 0.32 +1.0 188,335 + Xcc-8004.196.1 0.32 -0.7 188,335 + Xcc-8004.196.1 0.32 -0.1 188,335 + Xcc-8004.196.1 0.32 -0.8 188,335 + Xcc-8004.196.1 0.32 -0.1 188,335 + Xcc-8004.196.1 0.32 -0.4 188,336 - Xcc-8004.196.1 0.32 +1.1 188,336 - Xcc-8004.196.1 0.32 +1.2 188,336 - Xcc-8004.196.1 0.32 -0.9 188,336 - Xcc-8004.196.1 0.32 -0.4 188,336 - Xcc-8004.196.1 0.32 +0.6 188,336 - Xcc-8004.196.1 0.32 +0.4 188,336 - Xcc-8004.196.1 0.32 +0.9 188,435 - Xcc-8004.196.1 0.41 +1.1 188,509 + Xcc-8004.196.1 0.47 +0.3 188,509 + Xcc-8004.196.1 0.47 -0.2 188,509 + Xcc-8004.196.1 0.47 -0.4 188,510 - Xcc-8004.196.1 0.47 +2.1 188,510 - Xcc-8004.196.1 0.47 +0.5 188,510 - Xcc-8004.196.1 0.47 +0.9 188,510 - Xcc-8004.196.1 0.47 -0.4 188,848 + Xcc-8004.196.1 0.77 +0.4 188,849 - Xcc-8004.196.1 0.77 -0.4 188,849 - Xcc-8004.196.1 0.77 +0.3 188,931 + Xcc-8004.196.1 0.84 +0.7 188,932 - Xcc-8004.196.1 0.84 -0.2 188,932 - Xcc-8004.196.1 0.84 -1.1 189,159 + -0.7 189,179 + -2.2 189,179 + +0.2 189,179 + -0.9 189,180 - +0.7 189,180 - -0.9 189,180 - -0.1 189,180 - +0.5 189,180 - +0.1 189,208 + +0.9 189,209 - -0.8 189,423 - Xcc-8004.197.1 0.12 -1.9 189,423 - Xcc-8004.197.1 0.12 -1.1 189,827 + Xcc-8004.197.1 0.60 -1.0 189,827 + Xcc-8004.197.1 0.60 -0.7 189,827 + Xcc-8004.197.1 0.60 -0.4 189,828 - Xcc-8004.197.1 0.60 +0.7 189,828 - Xcc-8004.197.1 0.60 -0.7 189,828 - Xcc-8004.197.1 0.60 -0.4 189,996 + Xcc-8004.197.1 0.81 -0.6 189,996 + Xcc-8004.197.1 0.81 +0.0 189,997 - Xcc-8004.197.1 0.81 -0.7 189,997 - Xcc-8004.197.1 0.81 -1.1
Or see this region's nucleotide sequence