Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08235

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08230 and PFLU_RS08235 are separated by 138 nucleotidesPFLU_RS08235 and PFLU_RS08240 are separated by 123 nucleotides PFLU_RS08230: PFLU_RS08230 - potassium-transporting ATPase subunit KdpB, at 1,839,912 to 1,841,975 _RS08230 PFLU_RS08235: PFLU_RS08235 - potassium-transporting ATPase subunit KdpC, at 1,842,114 to 1,842,659 _RS08235 PFLU_RS08240: PFLU_RS08240 - sensor histidine kinase KdpD, at 1,842,783 to 1,845,434 _RS08240 Position (kb) 1842 1843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1841.146 kb on + strand, within PFLU_RS08230at 1841.146 kb on + strand, within PFLU_RS08230at 1841.146 kb on + strand, within PFLU_RS08230at 1841.146 kb on + strand, within PFLU_RS08230at 1841.146 kb on + strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.147 kb on - strand, within PFLU_RS08230at 1841.330 kb on - strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.685 kb on + strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.686 kb on - strand, within PFLU_RS08230at 1841.973 kb on + strandat 1841.973 kb on + strandat 1842.048 kb on + strandat 1842.048 kb on + strandat 1842.049 kb on - strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.067 kb on + strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.068 kb on - strandat 1842.113 kb on + strandat 1842.113 kb on + strandat 1842.114 kb on - strandat 1842.114 kb on - strandat 1842.114 kb on - strandat 1842.114 kb on - strandat 1842.114 kb on - strandat 1842.114 kb on - strandat 1842.401 kb on + strand, within PFLU_RS08235at 1842.401 kb on + strand, within PFLU_RS08235at 1842.402 kb on - strand, within PFLU_RS08235at 1842.402 kb on - strand, within PFLU_RS08235at 1842.402 kb on - strand, within PFLU_RS08235at 1842.402 kb on - strand, within PFLU_RS08235at 1842.427 kb on + strand, within PFLU_RS08235at 1842.427 kb on + strand, within PFLU_RS08235at 1842.428 kb on - strand, within PFLU_RS08235at 1842.428 kb on - strand, within PFLU_RS08235at 1842.457 kb on + strand, within PFLU_RS08235at 1842.467 kb on + strand, within PFLU_RS08235at 1842.467 kb on + strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.468 kb on - strand, within PFLU_RS08235at 1842.517 kb on - strand, within PFLU_RS08235at 1842.639 kb on - strandat 1842.639 kb on - strandat 1842.657 kb on + strandat 1842.658 kb on - strandat 1842.658 kb on - strandat 1842.658 kb on - strandat 1842.658 kb on - strandat 1842.658 kb on - strandat 1842.760 kb on + strandat 1842.760 kb on + strandat 1842.760 kb on + strandat 1842.760 kb on + strandat 1842.760 kb on + strandat 1842.761 kb on - strandat 1842.761 kb on - strandat 1842.888 kb on + strandat 1842.888 kb on + strandat 1842.888 kb on + strandat 1842.888 kb on + strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1842.889 kb on - strandat 1843.027 kb on - strandat 1843.242 kb on - strand, within PFLU_RS08240at 1843.362 kb on + strand, within PFLU_RS08240at 1843.362 kb on + strand, within PFLU_RS08240at 1843.362 kb on + strand, within PFLU_RS08240at 1843.362 kb on + strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240at 1843.363 kb on - strand, within PFLU_RS08240

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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1,841,146 + PFLU_RS08230 0.60 +1.3
1,841,146 + PFLU_RS08230 0.60 -1.2
1,841,146 + PFLU_RS08230 0.60 -0.5
1,841,146 + PFLU_RS08230 0.60 -0.7
1,841,146 + PFLU_RS08230 0.60 +1.3
1,841,147 - PFLU_RS08230 0.60 -0.6
1,841,147 - PFLU_RS08230 0.60 -0.3
1,841,147 - PFLU_RS08230 0.60 +0.4
1,841,147 - PFLU_RS08230 0.60 -0.1
1,841,147 - PFLU_RS08230 0.60 +0.2
1,841,147 - PFLU_RS08230 0.60 +0.9
1,841,330 - PFLU_RS08230 0.69 -1.7
1,841,685 + PFLU_RS08230 0.86 +0.7
1,841,685 + PFLU_RS08230 0.86 -2.4
1,841,685 + PFLU_RS08230 0.86 +0.9
1,841,685 + PFLU_RS08230 0.86 +0.8
1,841,685 + PFLU_RS08230 0.86 +0.0
1,841,685 + PFLU_RS08230 0.86 +1.4
1,841,685 + PFLU_RS08230 0.86 -1.1
1,841,685 + PFLU_RS08230 0.86 -1.3
1,841,685 + PFLU_RS08230 0.86 -0.9
1,841,686 - PFLU_RS08230 0.86 +0.1
1,841,686 - PFLU_RS08230 0.86 -0.0
1,841,686 - PFLU_RS08230 0.86 +0.1
1,841,686 - PFLU_RS08230 0.86 -0.3
1,841,686 - PFLU_RS08230 0.86 +0.3
1,841,686 - PFLU_RS08230 0.86 +1.4
1,841,686 - PFLU_RS08230 0.86 +2.0
1,841,686 - PFLU_RS08230 0.86 +0.4
1,841,686 - PFLU_RS08230 0.86 -0.8
1,841,686 - PFLU_RS08230 0.86 +0.5
1,841,973 + -0.1
1,841,973 + -0.1
1,842,048 + +0.2
1,842,048 + +0.9
1,842,049 - +0.4
1,842,067 + -1.4
1,842,067 + +0.7
1,842,067 + -0.5
1,842,067 + -0.7
1,842,067 + +0.5
1,842,067 + +0.4
1,842,067 + -0.6
1,842,067 + -1.2
1,842,067 + -0.5
1,842,067 + -0.1
1,842,067 + +0.0
1,842,067 + +1.1
1,842,067 + +0.4
1,842,067 + -0.2
1,842,068 - -0.2
1,842,068 - +0.6
1,842,068 - -2.1
1,842,068 - -0.1
1,842,068 - +1.7
1,842,068 - -0.5
1,842,068 - -0.7
1,842,068 - +0.0
1,842,068 - -0.2
1,842,113 + +1.0
1,842,113 + +1.3
1,842,114 - +0.1
1,842,114 - +0.4
1,842,114 - -0.2
1,842,114 - +1.0
1,842,114 - +0.4
1,842,114 - +1.2
1,842,401 + PFLU_RS08235 0.53 +0.4
1,842,401 + PFLU_RS08235 0.53 -0.4
1,842,402 - PFLU_RS08235 0.53 +1.0
1,842,402 - PFLU_RS08235 0.53 +1.5
1,842,402 - PFLU_RS08235 0.53 -0.1
1,842,402 - PFLU_RS08235 0.53 -0.1
1,842,427 + PFLU_RS08235 0.57 +0.6
1,842,427 + PFLU_RS08235 0.57 +0.0
1,842,428 - PFLU_RS08235 0.58 +0.5
1,842,428 - PFLU_RS08235 0.58 +0.5
1,842,457 + PFLU_RS08235 0.63 -3.3
1,842,467 + PFLU_RS08235 0.65 -0.5
1,842,467 + PFLU_RS08235 0.65 -0.9
1,842,468 - PFLU_RS08235 0.65 +0.4
1,842,468 - PFLU_RS08235 0.65 -0.8
1,842,468 - PFLU_RS08235 0.65 -1.6
1,842,468 - PFLU_RS08235 0.65 +0.6
1,842,468 - PFLU_RS08235 0.65 +0.8
1,842,468 - PFLU_RS08235 0.65 -0.5
1,842,468 - PFLU_RS08235 0.65 +0.6
1,842,517 - PFLU_RS08235 0.74 +0.3
1,842,639 - -0.8
1,842,639 - +0.4
1,842,657 + +2.3
1,842,658 - +1.0
1,842,658 - +1.6
1,842,658 - -1.3
1,842,658 - -0.8
1,842,658 - -0.1
1,842,760 + -1.3
1,842,760 + -0.4
1,842,760 + -0.6
1,842,760 + +0.1
1,842,760 + -1.4
1,842,761 - -2.3
1,842,761 - -0.9
1,842,888 + +1.9
1,842,888 + +0.1
1,842,888 + -0.6
1,842,888 + -1.2
1,842,889 - +0.7
1,842,889 - -1.3
1,842,889 - +0.5
1,842,889 - -0.5
1,842,889 - +0.9
1,842,889 - +1.3
1,842,889 - +0.6
1,842,889 - +0.3
1,843,027 - -0.7
1,843,242 - PFLU_RS08240 0.17 +0.3
1,843,362 + PFLU_RS08240 0.22 -0.3
1,843,362 + PFLU_RS08240 0.22 +0.4
1,843,362 + PFLU_RS08240 0.22 +0.3
1,843,362 + PFLU_RS08240 0.22 -1.3
1,843,363 - PFLU_RS08240 0.22 +0.6
1,843,363 - PFLU_RS08240 0.22 -1.5
1,843,363 - PFLU_RS08240 0.22 +1.0
1,843,363 - PFLU_RS08240 0.22 +0.9
1,843,363 - PFLU_RS08240 0.22 -0.1
1,843,363 - PFLU_RS08240 0.22 -0.2
1,843,363 - PFLU_RS08240 0.22 -0.3
1,843,363 - PFLU_RS08240 0.22 +0.1
1,843,363 - PFLU_RS08240 0.22 +0.3
1,843,363 - PFLU_RS08240 0.22 +2.3

Or see this region's nucleotide sequence