Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06193

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06192 and H281DRAFT_06193 are separated by 412 nucleotidesH281DRAFT_06193 and H281DRAFT_06194 are separated by 80 nucleotidesH281DRAFT_06194 and H281DRAFT_06195 are separated by 276 nucleotidesH281DRAFT_06195 and H281DRAFT_06196 are separated by 33 nucleotides H281DRAFT_06192: H281DRAFT_06192 - hypothetical protein, at 81,002 to 81,835 _06192 H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075 _06193 H281DRAFT_06194: H281DRAFT_06194 - Proteolipid membrane potential modulator, at 83,156 to 83,350 _06194 H281DRAFT_06195: H281DRAFT_06195 - hypothetical protein, at 83,627 to 83,890 _06195 H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891 _06196 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1 2at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.364 kb on + strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.365 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.409 kb on - strand, within H281DRAFT_06192at 81.426 kb on - strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.498 kb on + strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.499 kb on - strand, within H281DRAFT_06192at 81.501 kb on + strand, within H281DRAFT_06192at 81.501 kb on + strand, within H281DRAFT_06192at 81.525 kb on + strand, within H281DRAFT_06192at 81.525 kb on + strand, within H281DRAFT_06192at 81.526 kb on - strand, within H281DRAFT_06192at 81.532 kb on + strand, within H281DRAFT_06192at 81.591 kb on - strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.700 kb on + strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.701 kb on - strand, within H281DRAFT_06192at 81.702 kb on + strand, within H281DRAFT_06192at 81.702 kb on + strand, within H281DRAFT_06192at 81.703 kb on - strand, within H281DRAFT_06192at 81.703 kb on - strand, within H281DRAFT_06192at 81.837 kb on + strandat 81.838 kb on - strandat 81.958 kb on - strandat 81.975 kb on + strandat 81.975 kb on + strandat 81.976 kb on - strandat 81.992 kb on + strandat 82.007 kb on + strandat 82.008 kb on - strandat 82.039 kb on + strandat 82.039 kb on + strandat 82.105 kb on + strandat 82.105 kb on + strandat 82.116 kb on + strandat 82.318 kb on + strandat 82.332 kb on + strand, within H281DRAFT_06193at 82.333 kb on - strand, within H281DRAFT_06193at 82.389 kb on - strand, within H281DRAFT_06193at 82.514 kb on + strand, within H281DRAFT_06193at 82.515 kb on - strand, within H281DRAFT_06193at 82.580 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.708 kb on + strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.709 kb on - strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.754 kb on + strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193at 82.755 kb on - strand, within H281DRAFT_06193at 83.097 kb on + strandat 83.097 kb on + strandat 83.097 kb on + strandat 83.108 kb on + strandat 83.108 kb on + strandat 83.108 kb on + strandat 83.202 kb on + strand, within H281DRAFT_06194at 83.211 kb on - strand, within H281DRAFT_06194at 83.253 kb on - strand, within H281DRAFT_06194at 83.342 kb on + strandat 83.343 kb on - strandat 83.354 kb on + strandat 83.377 kb on - strandat 83.407 kb on - strandat 83.409 kb on + strandat 83.409 kb on + strandat 83.409 kb on + strandat 83.523 kb on - strandat 83.523 kb on - strandat 83.591 kb on + strandat 83.592 kb on - strandat 83.598 kb on + strandat 83.804 kb on + strand, within H281DRAFT_06195at 83.804 kb on + strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.805 kb on - strand, within H281DRAFT_06195at 83.806 kb on + strand, within H281DRAFT_06195at 83.807 kb on - strand, within H281DRAFT_06195at 83.807 kb on - strand, within H281DRAFT_06195at 83.860 kb on - strand, within H281DRAFT_06195at 84.059 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
remove
81,364 + H281DRAFT_06192 0.43 -0.8
81,364 + H281DRAFT_06192 0.43 +0.2
81,364 + H281DRAFT_06192 0.43 +0.6
81,364 + H281DRAFT_06192 0.43 +0.5
81,365 - H281DRAFT_06192 0.44 -0.8
81,365 - H281DRAFT_06192 0.44 +1.1
81,365 - H281DRAFT_06192 0.44 -0.2
81,409 - H281DRAFT_06192 0.49 -0.7
81,409 - H281DRAFT_06192 0.49 -0.1
81,409 - H281DRAFT_06192 0.49 +2.3
81,409 - H281DRAFT_06192 0.49 +1.5
81,426 - H281DRAFT_06192 0.51 +1.4
81,498 + H281DRAFT_06192 0.59 +0.4
81,498 + H281DRAFT_06192 0.59 -0.7
81,498 + H281DRAFT_06192 0.59 +0.1
81,498 + H281DRAFT_06192 0.59 +0.1
81,498 + H281DRAFT_06192 0.59 -1.7
81,498 + H281DRAFT_06192 0.59 -1.0
81,498 + H281DRAFT_06192 0.59 +0.8
81,498 + H281DRAFT_06192 0.59 -0.5
81,498 + H281DRAFT_06192 0.59 +0.1
81,498 + H281DRAFT_06192 0.59 -0.3
81,499 - H281DRAFT_06192 0.60 +0.6
81,499 - H281DRAFT_06192 0.60 -0.2
81,499 - H281DRAFT_06192 0.60 +0.2
81,499 - H281DRAFT_06192 0.60 -0.2
81,499 - H281DRAFT_06192 0.60 -1.0
81,501 + H281DRAFT_06192 0.60 -0.0
81,501 + H281DRAFT_06192 0.60 +0.5
81,525 + H281DRAFT_06192 0.63 +0.3
81,525 + H281DRAFT_06192 0.63 -0.7
81,526 - H281DRAFT_06192 0.63 -0.9
81,532 + H281DRAFT_06192 0.64 -1.4
81,591 - H281DRAFT_06192 0.71 -0.2
81,700 + H281DRAFT_06192 0.84 +0.1
81,700 + H281DRAFT_06192 0.84 +0.2
81,700 + H281DRAFT_06192 0.84 -0.4
81,700 + H281DRAFT_06192 0.84 -0.3
81,700 + H281DRAFT_06192 0.84 -0.7
81,701 - H281DRAFT_06192 0.84 -0.3
81,701 - H281DRAFT_06192 0.84 +0.1
81,701 - H281DRAFT_06192 0.84 +0.2
81,702 + H281DRAFT_06192 0.84 -0.5
81,702 + H281DRAFT_06192 0.84 -0.3
81,703 - H281DRAFT_06192 0.84 +0.9
81,703 - H281DRAFT_06192 0.84 +1.7
81,837 + +0.0
81,838 - -0.0
81,958 - +0.2
81,975 + -0.2
81,975 + +0.9
81,976 - +0.5
81,992 + -1.3
82,007 + -0.4
82,008 - +0.8
82,039 + -0.9
82,039 + -0.9
82,105 + -1.4
82,105 + +0.3
82,116 + +0.7
82,318 + -0.4
82,332 + H281DRAFT_06193 0.10 +0.5
82,333 - H281DRAFT_06193 0.10 +0.6
82,389 - H281DRAFT_06193 0.17 -0.0
82,514 + H281DRAFT_06193 0.32 +1.4
82,515 - H281DRAFT_06193 0.32 +0.3
82,580 + H281DRAFT_06193 0.40 +0.5
82,708 + H281DRAFT_06193 0.56 +0.5
82,708 + H281DRAFT_06193 0.56 +0.1
82,708 + H281DRAFT_06193 0.56 +0.4
82,709 - H281DRAFT_06193 0.56 +0.7
82,709 - H281DRAFT_06193 0.56 +0.1
82,709 - H281DRAFT_06193 0.56 -1.1
82,754 + H281DRAFT_06193 0.61 +1.4
82,754 + H281DRAFT_06193 0.61 +0.8
82,754 + H281DRAFT_06193 0.61 +0.4
82,755 - H281DRAFT_06193 0.61 +1.1
82,755 - H281DRAFT_06193 0.61 +0.4
83,097 + -0.4
83,097 + +0.4
83,097 + +1.1
83,108 + -1.5
83,108 + +0.0
83,108 + -0.4
83,202 + H281DRAFT_06194 0.24 -0.3
83,211 - H281DRAFT_06194 0.28 +0.6
83,253 - H281DRAFT_06194 0.50 +0.8
83,342 + +0.8
83,343 - -0.3
83,354 + -0.3
83,377 - -1.0
83,407 - +0.2
83,409 + +0.7
83,409 + +0.1
83,409 + -0.6
83,523 - +1.6
83,523 - +0.1
83,591 + +1.1
83,592 - +0.9
83,598 + +0.0
83,804 + H281DRAFT_06195 0.67 +0.7
83,804 + H281DRAFT_06195 0.67 -0.6
83,805 - H281DRAFT_06195 0.67 -0.9
83,805 - H281DRAFT_06195 0.67 -0.6
83,805 - H281DRAFT_06195 0.67 -0.4
83,806 + H281DRAFT_06195 0.68 -0.4
83,807 - H281DRAFT_06195 0.68 +0.0
83,807 - H281DRAFT_06195 0.68 -1.0
83,860 - H281DRAFT_06195 0.88 +0.8
84,059 + +0.3

Or see this region's nucleotide sequence