Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06080 and H281DRAFT_06081 are separated by 59 nucleotides H281DRAFT_06081 and H281DRAFT_06082 are separated by 53 nucleotides H281DRAFT_06082 and H281DRAFT_06083 are separated by 174 nucleotides H281DRAFT_06083 and H281DRAFT_06084 are separated by 143 nucleotides
H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091
_06080
H281DRAFT_06081: H281DRAFT_06081 - ubiquitin-hydrolase Zn-finger-containing protein, at 98,151 to 98,423
_06081
H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311
_06082
H281DRAFT_06083: H281DRAFT_06083 - heat shock protein Hsp20, at 101,486 to 102,121
_06083
H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840
_06084
Position (kb) 98
99
100
101
102 Strain fitness (log2 ratio) -1
0
1
2
3 at 97.498 kb on + strand, within H281DRAFT_06080 at 97.501 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.547 kb on + strand, within H281DRAFT_06080 at 97.548 kb on - strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.549 kb on + strand, within H281DRAFT_06080 at 97.619 kb on - strand, within H281DRAFT_06080 at 97.619 kb on - strand, within H281DRAFT_06080 at 97.699 kb on + strand, within H281DRAFT_06080 at 97.704 kb on - strand, within H281DRAFT_06080 at 97.886 kb on - strand, within H281DRAFT_06080 at 97.886 kb on - strand, within H281DRAFT_06080 at 97.971 kb on + strand at 97.972 kb on - strand at 97.972 kb on - strand at 97.972 kb on - strand at 97.972 kb on - strand at 98.082 kb on + strand at 98.128 kb on + strand at 98.128 kb on + strand at 98.144 kb on + strand at 98.145 kb on - strand at 98.245 kb on + strand, within H281DRAFT_06081 at 98.252 kb on - strand, within H281DRAFT_06081 at 99.188 kb on + strand, within H281DRAFT_06082 at 99.189 kb on - strand, within H281DRAFT_06082 at 99.638 kb on + strand, within H281DRAFT_06082 at 99.805 kb on - strand, within H281DRAFT_06082 at 99.854 kb on + strand, within H281DRAFT_06082 at 99.978 kb on + strand, within H281DRAFT_06082 at 99.978 kb on + strand, within H281DRAFT_06082 at 99.978 kb on + strand, within H281DRAFT_06082 at 99.979 kb on - strand, within H281DRAFT_06082 at 99.996 kb on - strand, within H281DRAFT_06082 at 100.105 kb on + strand, within H281DRAFT_06082 at 100.198 kb on - strand, within H281DRAFT_06082 at 100.225 kb on + strand, within H281DRAFT_06082 at 100.624 kb on + strand, within H281DRAFT_06082 at 100.641 kb on + strand, within H281DRAFT_06082 at 100.938 kb on + strand, within H281DRAFT_06082 at 101.042 kb on - strand at 101.080 kb on + strand at 101.215 kb on - strand at 101.649 kb on + strand, within H281DRAFT_06083 at 101.876 kb on + strand, within H281DRAFT_06083 at 102.275 kb on - strand at 102.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 97,498 + H281DRAFT_06080 0.52 -0.2 97,501 + H281DRAFT_06080 0.52 +1.3 97,547 + H281DRAFT_06080 0.56 -0.2 97,547 + H281DRAFT_06080 0.56 +0.0 97,547 + H281DRAFT_06080 0.56 -0.8 97,548 - H281DRAFT_06080 0.56 -0.5 97,549 + H281DRAFT_06080 0.56 +0.1 97,549 + H281DRAFT_06080 0.56 +0.5 97,549 + H281DRAFT_06080 0.56 +0.9 97,549 + H281DRAFT_06080 0.56 -0.4 97,549 + H281DRAFT_06080 0.56 +0.1 97,549 + H281DRAFT_06080 0.56 +0.4 97,619 - H281DRAFT_06080 0.62 -0.8 97,619 - H281DRAFT_06080 0.62 -0.0 97,699 + H281DRAFT_06080 0.68 +0.2 97,704 - H281DRAFT_06080 0.69 +0.8 97,886 - H281DRAFT_06080 0.83 +0.5 97,886 - H281DRAFT_06080 0.83 +0.2 97,971 + -0.1 97,972 - -0.1 97,972 - -0.8 97,972 - -0.6 97,972 - +0.2 98,082 + +0.3 98,128 + +1.1 98,128 + -0.5 98,144 + +0.1 98,145 - +1.8 98,245 + H281DRAFT_06081 0.34 -0.2 98,252 - H281DRAFT_06081 0.37 -0.3 99,188 + H281DRAFT_06082 0.25 -0.6 99,189 - H281DRAFT_06082 0.25 -0.4 99,638 + H281DRAFT_06082 0.41 +0.0 99,805 - H281DRAFT_06082 0.47 +0.2 99,854 + H281DRAFT_06082 0.49 +0.5 99,978 + H281DRAFT_06082 0.53 +1.3 99,978 + H281DRAFT_06082 0.53 -0.1 99,978 + H281DRAFT_06082 0.53 -0.2 99,979 - H281DRAFT_06082 0.53 -0.5 99,996 - H281DRAFT_06082 0.54 +0.1 100,105 + H281DRAFT_06082 0.57 +1.0 100,198 - H281DRAFT_06082 0.61 +0.1 100,225 + H281DRAFT_06082 0.62 +0.3 100,624 + H281DRAFT_06082 0.76 +3.7 100,641 + H281DRAFT_06082 0.76 +0.7 100,938 + H281DRAFT_06082 0.87 -0.0 101,042 - +0.2 101,080 + +0.9 101,215 - -0.4 101,649 + H281DRAFT_06083 0.26 -0.3 101,876 + H281DRAFT_06083 0.61 -0.4 102,275 - +0.1 102,275 - +0.2
Or see this region's nucleotide sequence