Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05903

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05902 and H281DRAFT_05903 are separated by 129 nucleotidesH281DRAFT_05903 and H281DRAFT_05904 are separated by 265 nucleotides H281DRAFT_05902: H281DRAFT_05902 - 2-Methylisocitrate lyase, PEP mutase family, at 38,427 to 39,275 _05902 H281DRAFT_05903: H281DRAFT_05903 - osmotically inducible protein OsmC, at 39,405 to 39,830 _05903 H281DRAFT_05904: H281DRAFT_05904 - transcriptional regulator, RpiR family, at 40,096 to 40,950 _05904 Position (kb) 39 40Strain fitness (log2 ratio) -1 0 1 2at 38.530 kb on - strand, within H281DRAFT_05902at 39.736 kb on + strandat 39.737 kb on - strand, within H281DRAFT_05903at 40.620 kb on + strand, within H281DRAFT_05904at 40.620 kb on + strand, within H281DRAFT_05904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
remove
38,530 - H281DRAFT_05902 0.12 -1.1
39,736 + +2.2
39,737 - H281DRAFT_05903 0.78 +0.6
40,620 + H281DRAFT_05904 0.61 +2.4
40,620 + H281DRAFT_05904 0.61 +2.4

Or see this region's nucleotide sequence