Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05898 and H281DRAFT_05899 are separated by 77 nucleotides H281DRAFT_05899 and H281DRAFT_05900 are separated by 154 nucleotides H281DRAFT_05900 and H281DRAFT_05901 are separated by 29 nucleotides H281DRAFT_05901 and H281DRAFT_05902 are separated by 151 nucleotides
H281DRAFT_05898: H281DRAFT_05898 - Short repeat of unknown function (DUF308), at 34,992 to 35,567
_05898
H281DRAFT_05899: H281DRAFT_05899 - hypothetical protein, at 35,645 to 36,259
_05899
H281DRAFT_05900: H281DRAFT_05900 - HD-GYP domain, at 36,414 to 37,904
_05900
H281DRAFT_05901: H281DRAFT_05901 - Cupin domain-containing protein, at 37,934 to 38,275
_05901
H281DRAFT_05902: H281DRAFT_05902 - 2-Methylisocitrate lyase, PEP mutase family, at 38,427 to 39,275
_05902
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1 at 35.421 kb on + strand, within H281DRAFT_05898 at 35.541 kb on - strand at 35.620 kb on + strand at 35.621 kb on - strand at 35.624 kb on + strand at 35.697 kb on + strand at 35.698 kb on - strand at 35.829 kb on + strand, within H281DRAFT_05899 at 35.923 kb on - strand, within H281DRAFT_05899 at 36.021 kb on + strand, within H281DRAFT_05899 at 36.022 kb on - strand, within H281DRAFT_05899 at 36.263 kb on + strand at 36.264 kb on - strand at 36.274 kb on + strand at 36.275 kb on - strand at 36.294 kb on + strand at 36.295 kb on - strand at 36.382 kb on - strand at 36.382 kb on - strand at 36.461 kb on - strand at 36.919 kb on - strand, within H281DRAFT_05900 at 36.919 kb on - strand, within H281DRAFT_05900 at 36.923 kb on - strand, within H281DRAFT_05900 at 36.923 kb on - strand, within H281DRAFT_05900 at 36.963 kb on + strand, within H281DRAFT_05900 at 36.964 kb on - strand, within H281DRAFT_05900 at 37.522 kb on + strand, within H281DRAFT_05900 at 37.523 kb on - strand, within H281DRAFT_05900 at 37.523 kb on - strand, within H281DRAFT_05900 at 37.993 kb on - strand, within H281DRAFT_05901 at 37.993 kb on - strand at 38.123 kb on + strand, within H281DRAFT_05901 at 38.123 kb on + strand, within H281DRAFT_05901 at 38.530 kb on - strand, within H281DRAFT_05902
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 35,421 + H281DRAFT_05898 0.74 -0.3 35,541 - +0.7 35,620 + -0.7 35,621 - +0.4 35,624 + -0.6 35,697 + -0.4 35,698 - -0.1 35,829 + H281DRAFT_05899 0.30 -1.2 35,923 - H281DRAFT_05899 0.45 -0.0 36,021 + H281DRAFT_05899 0.61 -0.9 36,022 - H281DRAFT_05899 0.61 -0.7 36,263 + +0.1 36,264 - -0.0 36,274 + +0.3 36,275 - +0.3 36,294 + +0.5 36,295 - -0.2 36,382 - +0.2 36,382 - +0.8 36,461 - +0.3 36,919 - H281DRAFT_05900 0.34 -0.4 36,919 - H281DRAFT_05900 0.34 +0.6 36,923 - H281DRAFT_05900 0.34 +0.6 36,923 - H281DRAFT_05900 0.34 -0.1 36,963 + H281DRAFT_05900 0.37 -0.0 36,964 - H281DRAFT_05900 0.37 -0.2 37,522 + H281DRAFT_05900 0.74 -0.7 37,523 - H281DRAFT_05900 0.74 +0.0 37,523 - H281DRAFT_05900 0.74 +0.4 37,993 - H281DRAFT_05901 0.17 +0.2 37,993 - -0.4 38,123 + H281DRAFT_05901 0.55 +0.1 38,123 + H281DRAFT_05901 0.55 +0.1 38,530 - H281DRAFT_05902 0.12 -1.1
Or see this region's nucleotide sequence