Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04811 and H281DRAFT_04812 are separated by 286 nucleotides H281DRAFT_04812 and H281DRAFT_04813 are separated by 245 nucleotides
H281DRAFT_04811: H281DRAFT_04811 - hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 246,631 to 247,491
_04811
H281DRAFT_04812: H281DRAFT_04812 - Rubredoxin, at 247,778 to 247,948
_04812
H281DRAFT_04813: H281DRAFT_04813 - hypothetical protein, at 248,194 to 249,603
_04813
Position (kb) 247
248 Strain fitness (log2 ratio) -1
0
1
2
3 at 246.927 kb on + strand, within H281DRAFT_04811 at 246.928 kb on - strand, within H281DRAFT_04811 at 246.928 kb on - strand, within H281DRAFT_04811 at 246.969 kb on - strand, within H281DRAFT_04811 at 247.204 kb on + strand, within H281DRAFT_04811 at 247.204 kb on + strand, within H281DRAFT_04811 at 247.225 kb on + strand, within H281DRAFT_04811 at 247.226 kb on - strand at 247.226 kb on - strand, within H281DRAFT_04811 at 247.226 kb on - strand, within H281DRAFT_04811 at 247.359 kb on + strand, within H281DRAFT_04811 at 247.359 kb on + strand, within H281DRAFT_04811 at 247.359 kb on + strand, within H281DRAFT_04811 at 247.360 kb on - strand, within H281DRAFT_04811 at 247.360 kb on - strand, within H281DRAFT_04811 at 247.361 kb on + strand, within H281DRAFT_04811 at 247.513 kb on - strand at 247.547 kb on + strand at 247.548 kb on - strand at 247.548 kb on - strand at 247.556 kb on + strand at 247.709 kb on - strand at 247.709 kb on - strand at 247.709 kb on - strand at 247.771 kb on + strand at 247.771 kb on + strand at 248.043 kb on + strand at 248.044 kb on - strand at 248.044 kb on - strand at 248.044 kb on - strand at 248.134 kb on + strand at 248.530 kb on - strand, within H281DRAFT_04813 at 248.689 kb on + strand, within H281DRAFT_04813 at 248.690 kb on - strand, within H281DRAFT_04813 at 248.790 kb on - strand, within H281DRAFT_04813 at 248.790 kb on - strand, within H281DRAFT_04813 at 248.818 kb on + strand, within H281DRAFT_04813 at 248.819 kb on - strand, within H281DRAFT_04813 at 248.906 kb on - strand, within H281DRAFT_04813
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 246,927 + H281DRAFT_04811 0.34 -0.1 246,928 - H281DRAFT_04811 0.34 -0.4 246,928 - H281DRAFT_04811 0.34 +1.3 246,969 - H281DRAFT_04811 0.39 -0.8 247,204 + H281DRAFT_04811 0.67 -0.2 247,204 + H281DRAFT_04811 0.67 +0.4 247,225 + H281DRAFT_04811 0.69 +1.9 247,226 - +2.9 247,226 - H281DRAFT_04811 0.69 -0.3 247,226 - H281DRAFT_04811 0.69 +0.7 247,359 + H281DRAFT_04811 0.85 -0.2 247,359 + H281DRAFT_04811 0.85 +0.4 247,359 + H281DRAFT_04811 0.85 -1.5 247,360 - H281DRAFT_04811 0.85 +0.9 247,360 - H281DRAFT_04811 0.85 -0.2 247,361 + H281DRAFT_04811 0.85 -0.4 247,513 - +0.2 247,547 + +0.4 247,548 - +0.1 247,548 - +0.2 247,556 + +0.6 247,709 - +1.7 247,709 - -0.7 247,709 - +1.1 247,771 + -0.4 247,771 + +0.9 248,043 + +0.5 248,044 - -0.8 248,044 - -0.2 248,044 - -0.9 248,134 + -0.5 248,530 - H281DRAFT_04813 0.24 +0.9 248,689 + H281DRAFT_04813 0.35 -0.0 248,690 - H281DRAFT_04813 0.35 +0.4 248,790 - H281DRAFT_04813 0.42 -0.1 248,790 - H281DRAFT_04813 0.42 +0.2 248,818 + H281DRAFT_04813 0.44 -0.6 248,819 - H281DRAFT_04813 0.44 +0.6 248,906 - H281DRAFT_04813 0.50 +1.2
Or see this region's nucleotide sequence