Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04262 and H281DRAFT_04263 are separated by 626 nucleotides
H281DRAFT_04262: H281DRAFT_04262 - LSU ribosomal protein L13P, at 380,131 to 380,559
_04262
H281DRAFT_04263: H281DRAFT_04263 - putative redox protein, at 381,186 to 381,608
_04263
Position (kb) 381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 380.869 kb on + strand at 380.869 kb on + strand at 380.869 kb on + strand at 380.869 kb on + strand at 380.870 kb on - strand at 380.871 kb on + strand at 380.871 kb on + strand at 380.872 kb on - strand at 380.966 kb on - strand at 380.966 kb on - strand at 380.969 kb on + strand at 380.969 kb on + strand at 380.969 kb on + strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.970 kb on - strand at 380.985 kb on - strand at 381.015 kb on + strand at 381.020 kb on + strand at 381.099 kb on + strand at 381.144 kb on + strand at 381.145 kb on - strand at 381.145 kb on - strand at 381.162 kb on + strand at 381.163 kb on - strand at 381.163 kb on - strand at 381.180 kb on + strand at 381.180 kb on + strand at 381.181 kb on - strand at 381.181 kb on - strand at 381.181 kb on - strand at 381.351 kb on + strand, within H281DRAFT_04263 at 381.352 kb on - strand at 381.537 kb on + strand, within H281DRAFT_04263 at 381.537 kb on + strand, within H281DRAFT_04263 at 381.537 kb on + strand, within H281DRAFT_04263 at 381.537 kb on + strand, within H281DRAFT_04263 at 381.538 kb on - strand, within H281DRAFT_04263 at 381.538 kb on - strand, within H281DRAFT_04263 at 381.538 kb on - strand, within H281DRAFT_04263 at 381.712 kb on + strand at 382.148 kb on - strand at 382.176 kb on - strand at 382.176 kb on - strand at 382.191 kb on + strand at 382.192 kb on - strand at 382.347 kb on + strand at 382.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 380,869 + +0.6 380,869 + -0.8 380,869 + +0.2 380,869 + -1.4 380,870 - +0.2 380,871 + +0.3 380,871 + -1.7 380,872 - -0.6 380,966 - +0.9 380,966 - +0.2 380,969 + -0.1 380,969 + -0.2 380,969 + -2.9 380,970 - -0.3 380,970 - -0.1 380,970 - -1.9 380,970 - +0.5 380,985 - -0.5 381,015 + +0.4 381,020 + +0.2 381,099 + +0.3 381,144 + +0.1 381,145 - +0.2 381,145 - -0.4 381,162 + -0.2 381,163 - -0.8 381,163 - -0.9 381,180 + +0.9 381,180 + -0.6 381,181 - -1.7 381,181 - -2.1 381,181 - -0.5 381,351 + H281DRAFT_04263 0.39 +0.0 381,352 - +0.9 381,537 + H281DRAFT_04263 0.83 -0.1 381,537 + H281DRAFT_04263 0.83 -0.6 381,537 + H281DRAFT_04263 0.83 -0.4 381,537 + H281DRAFT_04263 0.83 -0.1 381,538 - H281DRAFT_04263 0.83 -1.9 381,538 - H281DRAFT_04263 0.83 +0.4 381,538 - H281DRAFT_04263 0.83 +0.7 381,712 + -0.3 382,148 - +0.9 382,176 - -1.0 382,176 - +0.4 382,191 + +0.3 382,192 - -0.0 382,347 + +0.1 382,358 + +1.3
Or see this region's nucleotide sequence