Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03387 and H281DRAFT_03388 overlap by 4 nucleotides H281DRAFT_03388 and H281DRAFT_03389 are separated by 118 nucleotides
H281DRAFT_03387: H281DRAFT_03387 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 455,192 to 456,340
_03387
H281DRAFT_03388: H281DRAFT_03388 - Predicted dithiol-disulfide isomerase, DsbA family, at 456,337 to 456,990
_03388
H281DRAFT_03389: H281DRAFT_03389 - transcriptional regulator, LysR family, at 457,109 to 458,041
_03389
Position (kb) 456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.829 kb on + strand, within H281DRAFT_03387 at 456.177 kb on - strand, within H281DRAFT_03387 at 456.446 kb on - strand, within H281DRAFT_03388 at 456.540 kb on + strand, within H281DRAFT_03388 at 456.541 kb on - strand, within H281DRAFT_03388 at 456.869 kb on + strand, within H281DRAFT_03388 at 456.870 kb on - strand, within H281DRAFT_03388 at 457.024 kb on + strand at 457.302 kb on - strand, within H281DRAFT_03389 at 457.412 kb on + strand, within H281DRAFT_03389 at 457.412 kb on + strand, within H281DRAFT_03389 at 457.601 kb on + strand, within H281DRAFT_03389 at 457.691 kb on + strand, within H281DRAFT_03389 at 457.691 kb on + strand, within H281DRAFT_03389 at 457.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 455,829 + H281DRAFT_03387 0.55 -0.0 456,177 - H281DRAFT_03387 0.86 -0.4 456,446 - H281DRAFT_03388 0.17 +0.6 456,540 + H281DRAFT_03388 0.31 +0.1 456,541 - H281DRAFT_03388 0.31 -0.0 456,869 + H281DRAFT_03388 0.81 +1.4 456,870 - H281DRAFT_03388 0.81 -0.6 457,024 + +0.4 457,302 - H281DRAFT_03389 0.21 -3.6 457,412 + H281DRAFT_03389 0.32 +0.7 457,412 + H281DRAFT_03389 0.32 +0.4 457,601 + H281DRAFT_03389 0.53 +0.2 457,691 + H281DRAFT_03389 0.62 +0.4 457,691 + H281DRAFT_03389 0.62 -0.5 457,956 - +1.9
Or see this region's nucleotide sequence