Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03212 and H281DRAFT_03213 are separated by 164 nucleotides H281DRAFT_03213 and H281DRAFT_03214 are separated by 306 nucleotides H281DRAFT_03214 and H281DRAFT_03215 are separated by 463 nucleotides H281DRAFT_03215 and H281DRAFT_03216 overlap by 4 nucleotides
H281DRAFT_03212: H281DRAFT_03212 - hypothetical protein, at 259,577 to 259,837
_03212
H281DRAFT_03213: H281DRAFT_03213 - hypothetical protein, at 260,002 to 260,334
_03213
H281DRAFT_03214: H281DRAFT_03214 - 4-hydroxyphenylpyruvate dioxygenase, at 260,641 to 262,524
_03214
H281DRAFT_03215: H281DRAFT_03215 - 3-dehydroquinate dehydratase, at 262,988 to 263,443
_03215
H281DRAFT_03216: H281DRAFT_03216 - shikimate dehydrogenase (EC 1.1.1.25), at 263,440 to 264,342
_03216
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 259.817 kb on - strand at 260.067 kb on - strand, within H281DRAFT_03213 at 260.075 kb on + strand, within H281DRAFT_03213 at 260.176 kb on - strand, within H281DRAFT_03213 at 260.232 kb on + strand, within H281DRAFT_03213 at 260.334 kb on + strand at 260.334 kb on + strand at 260.335 kb on - strand at 260.486 kb on + strand at 260.498 kb on - strand at 260.498 kb on - strand at 260.763 kb on - strand at 260.809 kb on - strand at 260.876 kb on + strand, within H281DRAFT_03214 at 260.969 kb on - strand, within H281DRAFT_03214 at 260.988 kb on + strand, within H281DRAFT_03214 at 260.989 kb on - strand, within H281DRAFT_03214 at 261.302 kb on + strand, within H281DRAFT_03214 at 261.380 kb on + strand, within H281DRAFT_03214 at 261.531 kb on - strand, within H281DRAFT_03214 at 261.677 kb on + strand, within H281DRAFT_03214 at 261.805 kb on + strand, within H281DRAFT_03214 at 261.806 kb on - strand, within H281DRAFT_03214 at 261.830 kb on + strand, within H281DRAFT_03214 at 262.061 kb on - strand, within H281DRAFT_03214 at 262.231 kb on + strand, within H281DRAFT_03214 at 262.318 kb on + strand, within H281DRAFT_03214 at 262.413 kb on - strand at 262.480 kb on + strand at 262.699 kb on + strand at 262.896 kb on + strand at 262.946 kb on - strand at 263.004 kb on + strand at 263.226 kb on - strand, within H281DRAFT_03215 at 263.294 kb on - strand, within H281DRAFT_03215 at 263.336 kb on + strand, within H281DRAFT_03215 at 263.337 kb on - strand, within H281DRAFT_03215 at 263.388 kb on - strand, within H281DRAFT_03215
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 259,817 - -0.2 260,067 - H281DRAFT_03213 0.20 -0.5 260,075 + H281DRAFT_03213 0.22 -1.7 260,176 - H281DRAFT_03213 0.52 -0.6 260,232 + H281DRAFT_03213 0.69 +0.2 260,334 + +0.1 260,334 + -0.3 260,335 - +0.4 260,486 + +0.3 260,498 - +1.5 260,498 - +0.8 260,763 - -1.0 260,809 - +1.0 260,876 + H281DRAFT_03214 0.12 -0.3 260,969 - H281DRAFT_03214 0.17 -0.1 260,988 + H281DRAFT_03214 0.18 +1.0 260,989 - H281DRAFT_03214 0.18 +1.0 261,302 + H281DRAFT_03214 0.35 +0.4 261,380 + H281DRAFT_03214 0.39 +0.4 261,531 - H281DRAFT_03214 0.47 +0.5 261,677 + H281DRAFT_03214 0.55 +0.2 261,805 + H281DRAFT_03214 0.62 +1.4 261,806 - H281DRAFT_03214 0.62 -1.3 261,830 + H281DRAFT_03214 0.63 +1.2 262,061 - H281DRAFT_03214 0.75 +0.0 262,231 + H281DRAFT_03214 0.84 -0.3 262,318 + H281DRAFT_03214 0.89 +1.1 262,413 - +0.1 262,480 + +0.2 262,699 + -2.1 262,896 + +0.8 262,946 - +0.4 263,004 + -0.1 263,226 - H281DRAFT_03215 0.52 -0.1 263,294 - H281DRAFT_03215 0.67 +0.4 263,336 + H281DRAFT_03215 0.76 -0.1 263,337 - H281DRAFT_03215 0.77 +1.1 263,388 - H281DRAFT_03215 0.88 +0.5
Or see this region's nucleotide sequence