Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02861 and H281DRAFT_02863 are separated by 297 nucleotides H281DRAFT_02863 and H281DRAFT_02864 are separated by 9 nucleotides H281DRAFT_02864 and H281DRAFT_02865 are separated by 0 nucleotides
H281DRAFT_02861: H281DRAFT_02861 - precorrin-6Y C5,15-methyltransferase (decarboxylating), at 454,534 to 455,793
_02861
H281DRAFT_02863: H281DRAFT_02863 - precorrin-3B synthase, at 456,091 to 457,698
_02863
H281DRAFT_02864: H281DRAFT_02864 - precorrin-8X methylmutase, at 457,708 to 458,334
_02864
H281DRAFT_02865: H281DRAFT_02865 - precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase, at 458,335 to 459,075
_02865
Position (kb) 456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 455.882 kb on + strand at 455.882 kb on + strand at 455.882 kb on + strand at 455.882 kb on + strand at 455.883 kb on - strand at 455.885 kb on + strand at 455.886 kb on - strand at 455.886 kb on - strand at 455.886 kb on - strand at 455.912 kb on - strand at 455.961 kb on + strand at 455.961 kb on + strand at 455.962 kb on - strand at 456.086 kb on + strand at 456.262 kb on - strand, within H281DRAFT_02863 at 456.984 kb on + strand, within H281DRAFT_02863 at 456.985 kb on - strand, within H281DRAFT_02863 at 456.985 kb on - strand, within H281DRAFT_02863 at 456.993 kb on - strand, within H281DRAFT_02863 at 457.078 kb on + strand, within H281DRAFT_02863 at 457.185 kb on + strand, within H281DRAFT_02863 at 457.186 kb on - strand, within H281DRAFT_02863 at 457.585 kb on + strand at 457.586 kb on - strand at 457.586 kb on - strand at 457.717 kb on + strand at 457.741 kb on + strand at 457.742 kb on - strand at 458.002 kb on - strand, within H281DRAFT_02864 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.364 kb on - strand at 458.364 kb on - strand at 458.364 kb on - strand at 458.364 kb on - strand at 458.366 kb on - strand at 458.409 kb on - strand, within H281DRAFT_02865 at 458.450 kb on - strand, within H281DRAFT_02865 at 458.537 kb on - strand, within H281DRAFT_02865 at 458.575 kb on + strand, within H281DRAFT_02865 at 458.575 kb on + strand, within H281DRAFT_02865 at 458.618 kb on + strand, within H281DRAFT_02865 at 458.618 kb on + strand, within H281DRAFT_02865 at 458.693 kb on - strand, within H281DRAFT_02865 at 458.693 kb on - strand, within H281DRAFT_02865 at 458.698 kb on + strand, within H281DRAFT_02865 at 458.698 kb on + strand, within H281DRAFT_02865
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 455,882 + -0.4 455,882 + -2.5 455,882 + -1.9 455,882 + -1.7 455,883 - -1.7 455,885 + +0.6 455,886 - -1.4 455,886 - -0.3 455,886 - -3.3 455,912 - +0.0 455,961 + -0.5 455,961 + +1.4 455,962 - -3.2 456,086 + -1.9 456,262 - H281DRAFT_02863 0.11 -1.4 456,984 + H281DRAFT_02863 0.56 -1.9 456,985 - H281DRAFT_02863 0.56 -2.6 456,985 - H281DRAFT_02863 0.56 -3.3 456,993 - H281DRAFT_02863 0.56 -1.9 457,078 + H281DRAFT_02863 0.61 -0.3 457,185 + H281DRAFT_02863 0.68 -1.7 457,186 - H281DRAFT_02863 0.68 -2.2 457,585 + -1.0 457,586 - -1.7 457,586 - -1.7 457,717 + -1.9 457,741 + -0.9 457,742 - -2.2 458,002 - H281DRAFT_02864 0.47 -1.9 458,254 + H281DRAFT_02864 0.87 -2.7 458,254 + H281DRAFT_02864 0.87 -2.4 458,254 + H281DRAFT_02864 0.87 -2.5 458,364 - -0.7 458,364 - -0.6 458,364 - -0.3 458,364 - -3.1 458,366 - -1.4 458,409 - H281DRAFT_02865 0.10 -1.0 458,450 - H281DRAFT_02865 0.16 -2.2 458,537 - H281DRAFT_02865 0.27 -3.8 458,575 + H281DRAFT_02865 0.32 -1.6 458,575 + H281DRAFT_02865 0.32 -3.1 458,618 + H281DRAFT_02865 0.38 -2.0 458,618 + H281DRAFT_02865 0.38 -2.5 458,693 - H281DRAFT_02865 0.48 -2.1 458,693 - H281DRAFT_02865 0.48 -1.0 458,698 + H281DRAFT_02865 0.49 -1.7 458,698 + H281DRAFT_02865 0.49 +1.8
Or see this region's nucleotide sequence