Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02749 and H281DRAFT_02750 are separated by 555 nucleotides H281DRAFT_02750 and H281DRAFT_02751 overlap by 4 nucleotides H281DRAFT_02751 and H281DRAFT_02752 overlap by 4 nucleotides
H281DRAFT_02749: H281DRAFT_02749 - undecaprenyl-diphosphatase, at 337,264 to 337,953
_02749
H281DRAFT_02750: H281DRAFT_02750 - hypothetical protein, at 338,509 to 339,222
_02750
H281DRAFT_02751: H281DRAFT_02751 - carboxylesterase, at 339,219 to 340,106
_02751
H281DRAFT_02752: H281DRAFT_02752 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 340,103 to 340,909
_02752
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.536 kb on + strand, within H281DRAFT_02749 at 337.680 kb on - strand, within H281DRAFT_02749 at 337.872 kb on + strand, within H281DRAFT_02749 at 337.872 kb on + strand, within H281DRAFT_02749 at 337.873 kb on - strand, within H281DRAFT_02749 at 337.873 kb on - strand, within H281DRAFT_02749 at 337.873 kb on - strand, within H281DRAFT_02749 at 337.889 kb on + strand at 337.889 kb on + strand at 338.080 kb on + strand at 338.415 kb on + strand at 338.504 kb on + strand at 338.582 kb on - strand, within H281DRAFT_02750 at 338.889 kb on - strand, within H281DRAFT_02750 at 339.247 kb on + strand at 339.374 kb on + strand, within H281DRAFT_02751 at 339.467 kb on + strand, within H281DRAFT_02751 at 339.468 kb on - strand, within H281DRAFT_02751 at 339.616 kb on - strand, within H281DRAFT_02751 at 339.919 kb on - strand, within H281DRAFT_02751
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 337,536 + H281DRAFT_02749 0.39 +0.5 337,680 - H281DRAFT_02749 0.60 -0.2 337,872 + H281DRAFT_02749 0.88 +0.6 337,872 + H281DRAFT_02749 0.88 -0.1 337,873 - H281DRAFT_02749 0.88 -0.3 337,873 - H281DRAFT_02749 0.88 +1.8 337,873 - H281DRAFT_02749 0.88 +0.1 337,889 + -0.5 337,889 + -0.2 338,080 + -1.9 338,415 + -1.5 338,504 + +0.3 338,582 - H281DRAFT_02750 0.10 +0.1 338,889 - H281DRAFT_02750 0.53 +1.2 339,247 + -0.1 339,374 + H281DRAFT_02751 0.17 -2.8 339,467 + H281DRAFT_02751 0.28 +0.9 339,468 - H281DRAFT_02751 0.28 -1.2 339,616 - H281DRAFT_02751 0.45 -1.2 339,919 - H281DRAFT_02751 0.79 +0.4
Or see this region's nucleotide sequence