Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02586 and H281DRAFT_02587 are separated by 242 nucleotides H281DRAFT_02587 and H281DRAFT_02588 are separated by 355 nucleotides
H281DRAFT_02586: H281DRAFT_02586 - Cytochrome c, mono- and diheme variants, at 160,340 to 161,176
_02586
H281DRAFT_02587: H281DRAFT_02587 - Phospholipase/lecithinase/hemolysin, at 161,419 to 162,438
_02587
H281DRAFT_02588: H281DRAFT_02588 - PRC-barrel domain-containing protein, at 162,794 to 163,216
_02588
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1 at 160.883 kb on + strand, within H281DRAFT_02586 at 160.946 kb on - strand, within H281DRAFT_02586 at 160.993 kb on + strand, within H281DRAFT_02586 at 160.999 kb on - strand, within H281DRAFT_02586 at 161.084 kb on + strand, within H281DRAFT_02586 at 161.263 kb on - strand at 161.348 kb on + strand at 161.349 kb on - strand at 161.353 kb on + strand at 161.460 kb on - strand at 161.460 kb on - strand at 161.516 kb on + strand at 161.516 kb on + strand at 161.516 kb on + strand at 161.517 kb on - strand at 161.517 kb on - strand at 161.517 kb on - strand at 161.544 kb on - strand, within H281DRAFT_02587 at 161.863 kb on + strand, within H281DRAFT_02587 at 161.863 kb on + strand, within H281DRAFT_02587 at 162.264 kb on - strand, within H281DRAFT_02587 at 162.379 kb on + strand at 162.415 kb on + strand at 162.453 kb on - strand at 162.513 kb on - strand at 162.610 kb on + strand at 162.620 kb on + strand at 162.621 kb on - strand at 162.873 kb on - strand, within H281DRAFT_02588 at 162.873 kb on - strand, within H281DRAFT_02588 at 163.020 kb on + strand, within H281DRAFT_02588 at 163.030 kb on + strand, within H281DRAFT_02588 at 163.031 kb on - strand, within H281DRAFT_02588 at 163.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 160,883 + H281DRAFT_02586 0.65 +1.2 160,946 - H281DRAFT_02586 0.72 -0.4 160,993 + H281DRAFT_02586 0.78 +0.4 160,999 - H281DRAFT_02586 0.79 +1.1 161,084 + H281DRAFT_02586 0.89 -0.8 161,263 - +0.3 161,348 + +0.0 161,349 - +0.4 161,353 + -1.2 161,460 - -0.7 161,460 - -0.7 161,516 + +0.9 161,516 + -0.9 161,516 + -0.0 161,517 - -0.5 161,517 - -1.6 161,517 - +0.1 161,544 - H281DRAFT_02587 0.12 -0.4 161,863 + H281DRAFT_02587 0.44 -0.1 161,863 + H281DRAFT_02587 0.44 +0.7 162,264 - H281DRAFT_02587 0.83 +0.3 162,379 + -0.4 162,415 + -0.4 162,453 - +0.9 162,513 - -1.0 162,610 + +1.5 162,620 + +0.6 162,621 - -0.3 162,873 - H281DRAFT_02588 0.19 -0.1 162,873 - H281DRAFT_02588 0.19 -0.3 163,020 + H281DRAFT_02588 0.53 +0.3 163,030 + H281DRAFT_02588 0.56 -0.6 163,031 - H281DRAFT_02588 0.56 -0.5 163,336 - -0.3
Or see this region's nucleotide sequence