Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02456 and H281DRAFT_02457 are separated by 28 nucleotides H281DRAFT_02457 and H281DRAFT_02458 overlap by 4 nucleotides H281DRAFT_02458 and H281DRAFT_02459 overlap by 11 nucleotides H281DRAFT_02459 and H281DRAFT_02460 are separated by 64 nucleotides
H281DRAFT_02456: H281DRAFT_02456 - sarcosine oxidase subunit beta, at 21,856 to 23,100
_02456
H281DRAFT_02457: H281DRAFT_02457 - sarcosine oxidase subunit delta, at 23,129 to 23,443
_02457
H281DRAFT_02458: H281DRAFT_02458 - sarcosine oxidase subunit alpha, at 23,440 to 26,442
_02458
H281DRAFT_02459: H281DRAFT_02459 - sarcosine oxidase subunit gamma, at 26,432 to 27,088
_02459
H281DRAFT_02460: H281DRAFT_02460 - hypothetical protein, at 27,153 to 27,416
_02460
Position (kb) 23
24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 22.569 kb on + strand, within H281DRAFT_02456 at 22.696 kb on + strand, within H281DRAFT_02456 at 22.697 kb on - strand, within H281DRAFT_02456 at 22.750 kb on + strand, within H281DRAFT_02456 at 22.924 kb on + strand, within H281DRAFT_02456 at 22.925 kb on - strand, within H281DRAFT_02456 at 22.984 kb on + strand at 23.051 kb on - strand at 23.051 kb on - strand at 23.051 kb on - strand at 23.051 kb on - strand at 23.253 kb on - strand, within H281DRAFT_02457 at 23.306 kb on - strand, within H281DRAFT_02457 at 23.531 kb on - strand at 23.815 kb on + strand, within H281DRAFT_02458 at 23.818 kb on + strand, within H281DRAFT_02458 at 24.388 kb on + strand, within H281DRAFT_02458 at 24.395 kb on + strand, within H281DRAFT_02458 at 24.395 kb on + strand, within H281DRAFT_02458 at 24.625 kb on + strand, within H281DRAFT_02458 at 24.625 kb on + strand, within H281DRAFT_02458 at 24.626 kb on - strand, within H281DRAFT_02458 at 24.747 kb on + strand, within H281DRAFT_02458 at 24.888 kb on + strand, within H281DRAFT_02458 at 25.076 kb on + strand, within H281DRAFT_02458 at 25.085 kb on - strand, within H281DRAFT_02458 at 25.349 kb on - strand, within H281DRAFT_02458 at 25.496 kb on - strand, within H281DRAFT_02458 at 25.609 kb on + strand, within H281DRAFT_02458 at 25.610 kb on - strand, within H281DRAFT_02458 at 26.018 kb on - strand, within H281DRAFT_02458 at 26.037 kb on + strand, within H281DRAFT_02458 at 26.275 kb on + strand at 26.275 kb on + strand at 26.276 kb on - strand at 26.276 kb on - strand at 26.854 kb on + strand, within H281DRAFT_02459 at 26.855 kb on - strand, within H281DRAFT_02459 at 27.096 kb on - strand at 27.282 kb on + strand, within H281DRAFT_02460 at 27.286 kb on + strand, within H281DRAFT_02460 at 27.287 kb on - strand, within H281DRAFT_02460 at 27.333 kb on + strand, within H281DRAFT_02460 at 27.334 kb on - strand, within H281DRAFT_02460 at 27.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 22,569 + H281DRAFT_02456 0.57 +0.1 22,696 + H281DRAFT_02456 0.67 -0.7 22,697 - H281DRAFT_02456 0.68 -0.3 22,750 + H281DRAFT_02456 0.72 -0.3 22,924 + H281DRAFT_02456 0.86 +0.6 22,925 - H281DRAFT_02456 0.86 -2.0 22,984 + -0.6 23,051 - +0.8 23,051 - -0.4 23,051 - +0.7 23,051 - +0.5 23,253 - H281DRAFT_02457 0.39 +0.1 23,306 - H281DRAFT_02457 0.56 -0.1 23,531 - +0.6 23,815 + H281DRAFT_02458 0.12 -1.7 23,818 + H281DRAFT_02458 0.13 +0.6 24,388 + H281DRAFT_02458 0.32 +0.2 24,395 + H281DRAFT_02458 0.32 +0.0 24,395 + H281DRAFT_02458 0.32 +1.4 24,625 + H281DRAFT_02458 0.39 +0.3 24,625 + H281DRAFT_02458 0.39 +1.6 24,626 - H281DRAFT_02458 0.39 +0.1 24,747 + H281DRAFT_02458 0.44 +1.0 24,888 + H281DRAFT_02458 0.48 +0.3 25,076 + H281DRAFT_02458 0.54 -0.5 25,085 - H281DRAFT_02458 0.55 -1.0 25,349 - H281DRAFT_02458 0.64 +0.7 25,496 - H281DRAFT_02458 0.68 -0.3 25,609 + H281DRAFT_02458 0.72 +0.9 25,610 - H281DRAFT_02458 0.72 -0.3 26,018 - H281DRAFT_02458 0.86 +0.7 26,037 + H281DRAFT_02458 0.86 +0.4 26,275 + -0.9 26,275 + -0.2 26,276 - +0.2 26,276 - +0.4 26,854 + H281DRAFT_02459 0.64 -0.0 26,855 - H281DRAFT_02459 0.64 -0.3 27,096 - +0.6 27,282 + H281DRAFT_02460 0.49 +0.2 27,286 + H281DRAFT_02460 0.50 +0.7 27,287 - H281DRAFT_02460 0.51 -1.2 27,333 + H281DRAFT_02460 0.68 -0.3 27,334 - H281DRAFT_02460 0.69 +0.4 27,415 - -2.2
Or see this region's nucleotide sequence