Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02281 and H281DRAFT_02282 are separated by 48 nucleotides H281DRAFT_02282 and H281DRAFT_02283 are separated by 138 nucleotides H281DRAFT_02283 and H281DRAFT_02284 are separated by 133 nucleotides H281DRAFT_02284 and H281DRAFT_02285 overlap by 11 nucleotides
H281DRAFT_02281: H281DRAFT_02281 - hypothetical protein, at 426,706 to 427,509
_02281
H281DRAFT_02282: H281DRAFT_02282 - hypothetical protein, at 427,558 to 428,106
_02282
H281DRAFT_02283: H281DRAFT_02283 - hypothetical protein, at 428,245 to 428,460
_02283
H281DRAFT_02284: H281DRAFT_02284 - hypothetical protein, at 428,594 to 428,917
_02284
H281DRAFT_02285: H281DRAFT_02285 - Phage integrase family protein, at 428,907 to 430,307
_02285
Position (kb) 428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.266 kb on - strand, within H281DRAFT_02281 at 427.266 kb on - strand, within H281DRAFT_02281 at 427.285 kb on + strand, within H281DRAFT_02281 at 427.286 kb on - strand, within H281DRAFT_02281 at 427.286 kb on - strand, within H281DRAFT_02281 at 427.387 kb on + strand at 427.387 kb on + strand, within H281DRAFT_02281 at 427.388 kb on - strand, within H281DRAFT_02281 at 427.388 kb on - strand, within H281DRAFT_02281 at 427.388 kb on - strand, within H281DRAFT_02281 at 427.453 kb on + strand at 427.511 kb on + strand at 427.511 kb on + strand at 427.511 kb on + strand at 427.512 kb on - strand at 427.512 kb on - strand at 427.525 kb on - strand at 427.562 kb on - strand at 427.576 kb on + strand at 427.582 kb on + strand at 427.583 kb on - strand at 427.668 kb on + strand, within H281DRAFT_02282 at 427.669 kb on - strand, within H281DRAFT_02282 at 427.711 kb on + strand, within H281DRAFT_02282 at 427.712 kb on - strand, within H281DRAFT_02282 at 427.712 kb on - strand, within H281DRAFT_02282 at 427.717 kb on + strand, within H281DRAFT_02282 at 427.717 kb on + strand, within H281DRAFT_02282 at 427.718 kb on - strand at 427.718 kb on - strand, within H281DRAFT_02282 at 427.718 kb on - strand, within H281DRAFT_02282 at 427.718 kb on - strand, within H281DRAFT_02282 at 427.756 kb on + strand, within H281DRAFT_02282 at 427.812 kb on - strand, within H281DRAFT_02282 at 427.831 kb on + strand, within H281DRAFT_02282 at 427.832 kb on - strand, within H281DRAFT_02282 at 427.836 kb on + strand, within H281DRAFT_02282 at 427.836 kb on + strand, within H281DRAFT_02282 at 427.837 kb on - strand, within H281DRAFT_02282 at 427.864 kb on + strand, within H281DRAFT_02282 at 427.864 kb on + strand, within H281DRAFT_02282 at 427.864 kb on + strand, within H281DRAFT_02282 at 427.864 kb on + strand, within H281DRAFT_02282 at 427.865 kb on - strand, within H281DRAFT_02282 at 427.865 kb on - strand, within H281DRAFT_02282 at 427.866 kb on + strand, within H281DRAFT_02282 at 427.866 kb on + strand, within H281DRAFT_02282 at 428.108 kb on + strand at 428.109 kb on - strand at 428.109 kb on - strand at 428.152 kb on - strand at 428.186 kb on + strand at 428.203 kb on - strand at 428.222 kb on + strand at 428.222 kb on + strand at 428.222 kb on + strand at 428.223 kb on - strand at 428.223 kb on - strand at 428.272 kb on + strand, within H281DRAFT_02283 at 428.417 kb on - strand, within H281DRAFT_02283 at 428.417 kb on - strand, within H281DRAFT_02283 at 428.435 kb on + strand, within H281DRAFT_02283 at 428.435 kb on + strand, within H281DRAFT_02283 at 428.436 kb on - strand, within H281DRAFT_02283 at 428.466 kb on + strand at 428.474 kb on + strand at 428.527 kb on + strand at 428.608 kb on + strand at 428.609 kb on - strand at 428.641 kb on + strand, within H281DRAFT_02284 at 428.706 kb on + strand, within H281DRAFT_02284 at 428.706 kb on + strand, within H281DRAFT_02284 at 428.706 kb on + strand, within H281DRAFT_02284 at 428.832 kb on - strand, within H281DRAFT_02284 at 429.062 kb on - strand, within H281DRAFT_02285 at 429.089 kb on + strand, within H281DRAFT_02285 at 429.109 kb on - strand, within H281DRAFT_02285 at 429.213 kb on - strand, within H281DRAFT_02285 at 429.364 kb on - strand, within H281DRAFT_02285 at 429.380 kb on - strand, within H281DRAFT_02285 at 429.432 kb on + strand, within H281DRAFT_02285 at 429.433 kb on - strand, within H281DRAFT_02285 at 429.433 kb on - strand, within H281DRAFT_02285 at 429.433 kb on - strand, within H281DRAFT_02285
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 427,266 - H281DRAFT_02281 0.70 -1.2 427,266 - H281DRAFT_02281 0.70 +0.7 427,285 + H281DRAFT_02281 0.72 -0.6 427,286 - H281DRAFT_02281 0.72 +2.6 427,286 - H281DRAFT_02281 0.72 -0.4 427,387 + -0.6 427,387 + H281DRAFT_02281 0.85 -0.9 427,388 - H281DRAFT_02281 0.85 -0.1 427,388 - H281DRAFT_02281 0.85 +0.7 427,388 - H281DRAFT_02281 0.85 -0.8 427,453 + +0.1 427,511 + -0.4 427,511 + -0.2 427,511 + -0.0 427,512 - +0.2 427,512 - +0.1 427,525 - -0.1 427,562 - +0.5 427,576 + +0.1 427,582 + +0.0 427,583 - -0.7 427,668 + H281DRAFT_02282 0.20 +0.0 427,669 - H281DRAFT_02282 0.20 -0.6 427,711 + H281DRAFT_02282 0.28 -0.2 427,712 - H281DRAFT_02282 0.28 -1.9 427,712 - H281DRAFT_02282 0.28 -0.3 427,717 + H281DRAFT_02282 0.29 -0.3 427,717 + H281DRAFT_02282 0.29 +0.3 427,718 - +1.8 427,718 - H281DRAFT_02282 0.29 -0.7 427,718 - H281DRAFT_02282 0.29 -0.2 427,718 - H281DRAFT_02282 0.29 -0.7 427,756 + H281DRAFT_02282 0.36 -0.6 427,812 - H281DRAFT_02282 0.46 +0.6 427,831 + H281DRAFT_02282 0.50 -0.4 427,832 - H281DRAFT_02282 0.50 -0.3 427,836 + H281DRAFT_02282 0.51 -0.6 427,836 + H281DRAFT_02282 0.51 -0.3 427,837 - H281DRAFT_02282 0.51 -0.1 427,864 + H281DRAFT_02282 0.56 -0.9 427,864 + H281DRAFT_02282 0.56 -0.0 427,864 + H281DRAFT_02282 0.56 -0.3 427,864 + H281DRAFT_02282 0.56 -1.3 427,865 - H281DRAFT_02282 0.56 +1.0 427,865 - H281DRAFT_02282 0.56 +1.5 427,866 + H281DRAFT_02282 0.56 +0.1 427,866 + H281DRAFT_02282 0.56 +0.8 428,108 + -1.3 428,109 - +0.8 428,109 - +0.5 428,152 - +0.7 428,186 + -0.0 428,203 - -0.1 428,222 + +0.7 428,222 + +0.3 428,222 + +1.0 428,223 - -0.3 428,223 - +0.7 428,272 + H281DRAFT_02283 0.12 +0.5 428,417 - H281DRAFT_02283 0.80 +0.4 428,417 - H281DRAFT_02283 0.80 +0.8 428,435 + H281DRAFT_02283 0.88 -0.1 428,435 + H281DRAFT_02283 0.88 -0.4 428,436 - H281DRAFT_02283 0.88 -1.2 428,466 + -0.6 428,474 + -0.5 428,527 + -0.1 428,608 + +0.5 428,609 - -1.3 428,641 + H281DRAFT_02284 0.15 +0.7 428,706 + H281DRAFT_02284 0.35 +0.5 428,706 + H281DRAFT_02284 0.35 +0.0 428,706 + H281DRAFT_02284 0.35 +0.8 428,832 - H281DRAFT_02284 0.73 +0.8 429,062 - H281DRAFT_02285 0.11 +0.4 429,089 + H281DRAFT_02285 0.13 -0.0 429,109 - H281DRAFT_02285 0.14 +0.2 429,213 - H281DRAFT_02285 0.22 +0.0 429,364 - H281DRAFT_02285 0.33 +0.2 429,380 - H281DRAFT_02285 0.34 -1.2 429,432 + H281DRAFT_02285 0.37 +0.0 429,433 - H281DRAFT_02285 0.38 +0.4 429,433 - H281DRAFT_02285 0.38 -0.6 429,433 - H281DRAFT_02285 0.38 -1.1
Or see this region's nucleotide sequence