Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02182 and H281DRAFT_02183 are separated by 22 nucleotides H281DRAFT_02183 and H281DRAFT_02184 are separated by 173 nucleotides H281DRAFT_02184 and H281DRAFT_02185 overlap by 22 nucleotides
H281DRAFT_02182: H281DRAFT_02182 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 323,869 to 326,256
_02182
H281DRAFT_02183: H281DRAFT_02183 - carbon-monoxide dehydrogenase medium subunit, at 326,279 to 327,076
_02183
H281DRAFT_02184: H281DRAFT_02184 - MoxR-like ATPase, at 327,250 to 328,137
_02184
H281DRAFT_02185: H281DRAFT_02185 - hypothetical protein, at 328,116 to 329,405
_02185
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.283 kb on - strand at 326.294 kb on + strand at 326.295 kb on - strand at 326.726 kb on + strand, within H281DRAFT_02183 at 326.727 kb on - strand, within H281DRAFT_02183 at 326.727 kb on - strand, within H281DRAFT_02183 at 326.727 kb on - strand, within H281DRAFT_02183 at 327.074 kb on + strand at 327.087 kb on + strand at 327.113 kb on + strand at 327.113 kb on + strand at 327.171 kb on + strand at 327.171 kb on + strand at 327.171 kb on + strand at 327.171 kb on + strand at 327.172 kb on - strand at 327.172 kb on - strand at 327.302 kb on - strand at 327.335 kb on - strand at 327.349 kb on - strand, within H281DRAFT_02184 at 327.455 kb on - strand, within H281DRAFT_02184 at 327.455 kb on - strand, within H281DRAFT_02184 at 327.482 kb on + strand, within H281DRAFT_02184 at 327.482 kb on + strand, within H281DRAFT_02184 at 327.484 kb on + strand, within H281DRAFT_02184 at 327.485 kb on - strand at 327.485 kb on - strand, within H281DRAFT_02184 at 327.566 kb on - strand, within H281DRAFT_02184 at 327.830 kb on - strand, within H281DRAFT_02184 at 328.073 kb on - strand at 328.073 kb on - strand at 328.073 kb on - strand at 328.073 kb on - strand at 328.073 kb on - strand at 328.073 kb on - strand at 328.846 kb on + strand, within H281DRAFT_02185 at 328.847 kb on - strand, within H281DRAFT_02185 at 328.867 kb on - strand, within H281DRAFT_02185 at 328.885 kb on - strand, within H281DRAFT_02185 at 328.950 kb on - strand, within H281DRAFT_02185 at 328.950 kb on - strand, within H281DRAFT_02185
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 326,283 - +0.2 326,294 + -1.3 326,295 - -0.4 326,726 + H281DRAFT_02183 0.56 +2.1 326,727 - H281DRAFT_02183 0.56 -1.2 326,727 - H281DRAFT_02183 0.56 -0.2 326,727 - H281DRAFT_02183 0.56 -0.4 327,074 + -0.4 327,087 + +0.2 327,113 + -0.1 327,113 + -1.2 327,171 + -1.8 327,171 + -0.4 327,171 + -0.2 327,171 + -0.5 327,172 - -0.1 327,172 - -0.1 327,302 - +0.5 327,335 - -1.2 327,349 - H281DRAFT_02184 0.11 -0.0 327,455 - H281DRAFT_02184 0.23 -0.4 327,455 - H281DRAFT_02184 0.23 +0.3 327,482 + H281DRAFT_02184 0.26 -0.1 327,482 + H281DRAFT_02184 0.26 -0.7 327,484 + H281DRAFT_02184 0.26 +1.1 327,485 - -0.3 327,485 - H281DRAFT_02184 0.26 -0.5 327,566 - H281DRAFT_02184 0.36 -0.5 327,830 - H281DRAFT_02184 0.65 -0.6 328,073 - -0.2 328,073 - -0.3 328,073 - -0.8 328,073 - +0.7 328,073 - -0.1 328,073 - +0.7 328,846 + H281DRAFT_02185 0.57 +0.8 328,847 - H281DRAFT_02185 0.57 +2.1 328,867 - H281DRAFT_02185 0.58 +0.1 328,885 - H281DRAFT_02185 0.60 -0.0 328,950 - H281DRAFT_02185 0.65 -0.2 328,950 - H281DRAFT_02185 0.65 +0.1
Or see this region's nucleotide sequence