Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02151

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02149 and H281DRAFT_02150 are separated by 25 nucleotidesH281DRAFT_02150 and H281DRAFT_02151 are separated by 238 nucleotidesH281DRAFT_02151 and H281DRAFT_02152 are separated by 25 nucleotides H281DRAFT_02149: H281DRAFT_02149 - Osmotically-inducible protein OsmY, contains BON domain, at 289,683 to 290,474 _02149 H281DRAFT_02150: H281DRAFT_02150 - phosphoheptose isomerase, at 290,500 to 291,087 _02150 H281DRAFT_02151: H281DRAFT_02151 - putative endonuclease, at 291,326 to 291,808 _02151 H281DRAFT_02152: H281DRAFT_02152 - 16S rRNA (cytidine1402-2'-O)-methyltransferase, at 291,834 to 292,712 _02152 Position (kb) 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.480 kb on - strandat 290.480 kb on - strandat 290.480 kb on - strandat 290.539 kb on + strandat 290.540 kb on - strandat 290.540 kb on - strandat 290.626 kb on + strand, within H281DRAFT_02150at 290.626 kb on + strand, within H281DRAFT_02150at 290.626 kb on + strand, within H281DRAFT_02150at 290.790 kb on - strand, within H281DRAFT_02150at 290.790 kb on - strand, within H281DRAFT_02150at 290.807 kb on + strand, within H281DRAFT_02150at 290.838 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.848 kb on - strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 291.052 kb on - strandat 291.096 kb on + strandat 291.097 kb on - strandat 291.097 kb on - strandat 291.104 kb on - strandat 291.112 kb on + strandat 291.145 kb on + strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.172 kb on - strandat 291.172 kb on - strandat 291.300 kb on + strandat 291.444 kb on + strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151at 291.511 kb on - strand, within H281DRAFT_02151at 291.546 kb on - strand, within H281DRAFT_02151at 291.546 kb on - strand, within H281DRAFT_02151at 291.870 kb on + strandat 291.870 kb on + strandat 291.870 kb on + strandat 291.888 kb on + strandat 291.888 kb on + strandat 291.888 kb on + strandat 291.889 kb on - strandat 291.889 kb on - strandat 291.889 kb on - strandat 291.889 kb on - strandat 292.012 kb on - strand, within H281DRAFT_02152at 292.049 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.110 kb on + strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.111 kb on - strand, within H281DRAFT_02152at 292.350 kb on + strand, within H281DRAFT_02152at 292.351 kb on - strand, within H281DRAFT_02152at 292.373 kb on - strand, within H281DRAFT_02152at 292.373 kb on - strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.531 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.540 kb on + strand, within H281DRAFT_02152at 292.541 kb on - strand, within H281DRAFT_02152at 292.675 kb on - strandat 292.731 kb on - strandat 292.806 kb on + strandat 292.806 kb on + strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strandat 292.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
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290,479 + +0.6
290,479 + +0.3
290,479 + -1.0
290,479 + +2.3
290,479 + -2.2
290,480 - +0.7
290,480 - +0.4
290,480 - -0.0
290,539 + -0.3
290,540 - +0.5
290,540 - -0.5
290,626 + H281DRAFT_02150 0.21 +0.4
290,626 + H281DRAFT_02150 0.21 -0.4
290,626 + H281DRAFT_02150 0.21 +0.5
290,790 - H281DRAFT_02150 0.49 +0.5
290,790 - H281DRAFT_02150 0.49 -2.3
290,807 + H281DRAFT_02150 0.52 +0.5
290,838 + H281DRAFT_02150 0.57 +0.8
290,847 + H281DRAFT_02150 0.59 -1.5
290,847 + H281DRAFT_02150 0.59 +0.1
290,847 + H281DRAFT_02150 0.59 +0.4
290,847 + H281DRAFT_02150 0.59 +1.1
290,847 + H281DRAFT_02150 0.59 -1.0
290,848 - H281DRAFT_02150 0.59 +0.4
290,955 + H281DRAFT_02150 0.77 -0.4
290,955 + H281DRAFT_02150 0.77 +0.4
291,052 - -0.9
291,096 + -0.2
291,097 - +0.2
291,097 - +1.6
291,104 - +0.4
291,112 + -0.0
291,145 + -0.0
291,146 - -0.4
291,146 - +1.4
291,146 - +0.3
291,146 - -0.8
291,146 - -0.1
291,172 - +1.5
291,172 - +0.0
291,300 + -0.4
291,444 + H281DRAFT_02151 0.24 -0.2
291,445 - H281DRAFT_02151 0.25 +1.5
291,445 - H281DRAFT_02151 0.25 +0.9
291,445 - H281DRAFT_02151 0.25 -0.5
291,462 - H281DRAFT_02151 0.28 -0.0
291,462 - H281DRAFT_02151 0.28 +1.0
291,511 - H281DRAFT_02151 0.38 -0.1
291,546 - H281DRAFT_02151 0.46 +0.2
291,546 - H281DRAFT_02151 0.46 +0.4
291,870 + +0.5
291,870 + -0.8
291,870 + +0.2
291,888 + -0.0
291,888 + +0.3
291,888 + -0.8
291,889 - -0.5
291,889 - +0.5
291,889 - +0.3
291,889 - +0.3
292,012 - H281DRAFT_02152 0.20 -0.6
292,049 + H281DRAFT_02152 0.24 -0.8
292,110 + H281DRAFT_02152 0.31 -0.2
292,110 + H281DRAFT_02152 0.31 -1.0
292,110 + H281DRAFT_02152 0.31 +0.7
292,110 + H281DRAFT_02152 0.31 -0.2
292,111 - H281DRAFT_02152 0.32 -0.3
292,111 - H281DRAFT_02152 0.32 -1.4
292,111 - H281DRAFT_02152 0.32 +0.3
292,111 - H281DRAFT_02152 0.32 +0.4
292,350 + H281DRAFT_02152 0.59 +0.8
292,351 - H281DRAFT_02152 0.59 +1.0
292,373 - H281DRAFT_02152 0.61 -1.3
292,373 - H281DRAFT_02152 0.61 -0.5
292,531 + H281DRAFT_02152 0.79 +0.1
292,531 + H281DRAFT_02152 0.79 -1.2
292,531 + H281DRAFT_02152 0.79 -0.6
292,540 + H281DRAFT_02152 0.80 +0.4
292,540 + H281DRAFT_02152 0.80 +0.3
292,540 + H281DRAFT_02152 0.80 +0.5
292,540 + H281DRAFT_02152 0.80 -0.4
292,541 - H281DRAFT_02152 0.80 -0.9
292,675 - -0.1
292,731 - +0.8
292,806 + -0.7
292,806 + +0.3
292,807 - -0.5
292,807 - -0.4
292,807 - +1.4
292,807 - +0.3
292,807 - +0.5

Or see this region's nucleotide sequence