Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02059 and H281DRAFT_02060 are separated by 25 nucleotides H281DRAFT_02060 and H281DRAFT_02061 overlap by 4 nucleotides
H281DRAFT_02059: H281DRAFT_02059 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 181,474 to 182,436
_02059
H281DRAFT_02060: H281DRAFT_02060 - phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein, at 182,462 to 183,340
_02060
H281DRAFT_02061: H281DRAFT_02061 - phospholipid/cholesterol/gamma-HCH transport system permease protein, at 183,337 to 184,506
_02061
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3 at 181.504 kb on - strand at 181.815 kb on + strand, within H281DRAFT_02059 at 181.815 kb on + strand at 182.194 kb on - strand, within H281DRAFT_02059 at 182.265 kb on + strand, within H281DRAFT_02059 at 182.265 kb on + strand, within H281DRAFT_02059 at 182.265 kb on + strand, within H281DRAFT_02059 at 182.268 kb on - strand, within H281DRAFT_02059 at 182.268 kb on - strand, within H281DRAFT_02059 at 182.299 kb on + strand, within H281DRAFT_02059 at 182.300 kb on - strand, within H281DRAFT_02059 at 182.325 kb on - strand, within H281DRAFT_02059 at 182.398 kb on - strand at 182.398 kb on - strand at 182.449 kb on + strand at 182.450 kb on - strand at 182.571 kb on + strand, within H281DRAFT_02060 at 182.840 kb on + strand, within H281DRAFT_02060 at 183.236 kb on + strand, within H281DRAFT_02060 at 183.236 kb on + strand, within H281DRAFT_02060 at 183.237 kb on - strand, within H281DRAFT_02060 at 183.314 kb on + strand at 183.327 kb on - strand at 183.460 kb on - strand, within H281DRAFT_02061 at 183.575 kb on + strand, within H281DRAFT_02061 at 183.576 kb on - strand, within H281DRAFT_02061 at 183.576 kb on - strand, within H281DRAFT_02061 at 183.576 kb on - strand, within H281DRAFT_02061 at 183.576 kb on - strand, within H281DRAFT_02061 at 183.859 kb on - strand, within H281DRAFT_02061 at 183.869 kb on + strand, within H281DRAFT_02061 at 183.869 kb on + strand, within H281DRAFT_02061 at 183.869 kb on + strand, within H281DRAFT_02061 at 183.870 kb on - strand, within H281DRAFT_02061 at 183.911 kb on + strand, within H281DRAFT_02061 at 183.911 kb on + strand, within H281DRAFT_02061 at 183.912 kb on - strand, within H281DRAFT_02061 at 183.912 kb on - strand at 183.912 kb on - strand, within H281DRAFT_02061 at 183.912 kb on - strand, within H281DRAFT_02061 at 183.980 kb on + strand, within H281DRAFT_02061 at 183.980 kb on + strand, within H281DRAFT_02061 at 183.981 kb on - strand, within H281DRAFT_02061 at 184.065 kb on + strand, within H281DRAFT_02061 at 184.081 kb on + strand, within H281DRAFT_02061 at 184.082 kb on - strand, within H281DRAFT_02061 at 184.082 kb on - strand, within H281DRAFT_02061 at 184.236 kb on + strand, within H281DRAFT_02061 at 184.237 kb on - strand, within H281DRAFT_02061 at 184.237 kb on - strand, within H281DRAFT_02061 at 184.237 kb on - strand, within H281DRAFT_02061 at 184.298 kb on - strand, within H281DRAFT_02061
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 181,504 - -0.3 181,815 + H281DRAFT_02059 0.35 -0.9 181,815 + +2.5 182,194 - H281DRAFT_02059 0.75 +0.2 182,265 + H281DRAFT_02059 0.82 +0.1 182,265 + H281DRAFT_02059 0.82 +0.3 182,265 + H281DRAFT_02059 0.82 +1.9 182,268 - H281DRAFT_02059 0.82 -1.2 182,268 - H281DRAFT_02059 0.82 -1.5 182,299 + H281DRAFT_02059 0.86 +0.5 182,300 - H281DRAFT_02059 0.86 +0.4 182,325 - H281DRAFT_02059 0.88 +0.3 182,398 - -0.5 182,398 - -0.0 182,449 + +1.2 182,450 - +1.2 182,571 + H281DRAFT_02060 0.12 -0.5 182,840 + H281DRAFT_02060 0.43 -0.3 183,236 + H281DRAFT_02060 0.88 -0.2 183,236 + H281DRAFT_02060 0.88 -0.8 183,237 - H281DRAFT_02060 0.88 +1.1 183,314 + -0.5 183,327 - -0.6 183,460 - H281DRAFT_02061 0.11 +0.6 183,575 + H281DRAFT_02061 0.20 -0.6 183,576 - H281DRAFT_02061 0.20 -0.9 183,576 - H281DRAFT_02061 0.20 +0.1 183,576 - H281DRAFT_02061 0.20 -0.6 183,576 - H281DRAFT_02061 0.20 -0.1 183,859 - H281DRAFT_02061 0.45 -0.6 183,869 + H281DRAFT_02061 0.45 +0.2 183,869 + H281DRAFT_02061 0.45 +0.1 183,869 + H281DRAFT_02061 0.45 +0.0 183,870 - H281DRAFT_02061 0.46 -0.4 183,911 + H281DRAFT_02061 0.49 +0.2 183,911 + H281DRAFT_02061 0.49 -1.1 183,912 - H281DRAFT_02061 0.49 +3.5 183,912 - +0.4 183,912 - H281DRAFT_02061 0.49 +1.8 183,912 - H281DRAFT_02061 0.49 -0.5 183,980 + H281DRAFT_02061 0.55 -0.6 183,980 + H281DRAFT_02061 0.55 +0.5 183,981 - H281DRAFT_02061 0.55 +0.4 184,065 + H281DRAFT_02061 0.62 +0.6 184,081 + H281DRAFT_02061 0.64 +1.4 184,082 - H281DRAFT_02061 0.64 -0.3 184,082 - H281DRAFT_02061 0.64 +1.1 184,236 + H281DRAFT_02061 0.77 -1.4 184,237 - H281DRAFT_02061 0.77 -0.1 184,237 - H281DRAFT_02061 0.77 -0.4 184,237 - H281DRAFT_02061 0.77 -0.7 184,298 - H281DRAFT_02061 0.82 -0.0
Or see this region's nucleotide sequence