Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01480 and H281DRAFT_01481 are separated by 778 nucleotides H281DRAFT_01481 and H281DRAFT_01482 are separated by 18 nucleotides
H281DRAFT_01480: H281DRAFT_01480 - 4-hydroxy-tetrahydrodipicolinate synthase, at 348,624 to 349,523
_01480
H281DRAFT_01481: H281DRAFT_01481 - Uncharacterized conserved protein, at 350,302 to 351,840
_01481
H281DRAFT_01482: H281DRAFT_01482 - Uncharacterized conserved protein, at 351,859 to 353,337
_01482
Position (kb) 350
351
352 Strain fitness (log2 ratio) -1
0
1
2
3 at 350.075 kb on + strand at 350.075 kb on + strand at 350.210 kb on + strand at 350.253 kb on + strand at 350.254 kb on - strand at 350.297 kb on + strand at 350.367 kb on - strand at 350.452 kb on - strand at 350.453 kb on + strand at 350.454 kb on - strand at 350.454 kb on - strand at 350.454 kb on - strand at 350.556 kb on - strand, within H281DRAFT_01481 at 350.613 kb on - strand, within H281DRAFT_01481 at 350.720 kb on + strand, within H281DRAFT_01481 at 350.720 kb on + strand, within H281DRAFT_01481 at 350.721 kb on - strand, within H281DRAFT_01481 at 350.778 kb on + strand, within H281DRAFT_01481 at 351.048 kb on - strand, within H281DRAFT_01481 at 351.294 kb on - strand, within H281DRAFT_01481 at 351.294 kb on - strand, within H281DRAFT_01481 at 351.497 kb on - strand, within H281DRAFT_01481 at 351.582 kb on - strand, within H281DRAFT_01481 at 351.738 kb on + strand at 351.806 kb on - strand at 351.822 kb on - strand at 351.841 kb on - strand at 351.861 kb on - strand at 351.923 kb on + strand at 351.923 kb on + strand at 351.935 kb on + strand at 351.936 kb on - strand at 351.937 kb on + strand at 351.937 kb on + strand at 352.112 kb on + strand, within H281DRAFT_01482 at 352.113 kb on - strand, within H281DRAFT_01482 at 352.204 kb on - strand, within H281DRAFT_01482 at 352.218 kb on - strand, within H281DRAFT_01482 at 352.218 kb on - strand, within H281DRAFT_01482 at 352.286 kb on + strand, within H281DRAFT_01482 at 352.286 kb on + strand, within H281DRAFT_01482 at 352.287 kb on - strand, within H281DRAFT_01482 at 352.473 kb on - strand, within H281DRAFT_01482 at 352.653 kb on - strand, within H281DRAFT_01482 at 352.815 kb on - strand, within H281DRAFT_01482
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 350,075 + +0.2 350,075 + +0.1 350,210 + -0.2 350,253 + -0.3 350,254 - -0.3 350,297 + +0.3 350,367 - +3.5 350,452 - +0.0 350,453 + -1.2 350,454 - -0.1 350,454 - -0.8 350,454 - -1.0 350,556 - H281DRAFT_01481 0.17 +0.0 350,613 - H281DRAFT_01481 0.20 +0.6 350,720 + H281DRAFT_01481 0.27 +0.0 350,720 + H281DRAFT_01481 0.27 +1.6 350,721 - H281DRAFT_01481 0.27 +0.2 350,778 + H281DRAFT_01481 0.31 -0.1 351,048 - H281DRAFT_01481 0.48 -0.4 351,294 - H281DRAFT_01481 0.64 -0.1 351,294 - H281DRAFT_01481 0.64 -0.2 351,497 - H281DRAFT_01481 0.78 -0.0 351,582 - H281DRAFT_01481 0.83 -0.6 351,738 + +0.2 351,806 - -0.7 351,822 - +0.4 351,841 - +0.5 351,861 - +0.1 351,923 + +0.7 351,923 + -1.1 351,935 + -0.2 351,936 - +0.3 351,937 + -0.0 351,937 + +0.2 352,112 + H281DRAFT_01482 0.17 +0.1 352,113 - H281DRAFT_01482 0.17 -0.9 352,204 - H281DRAFT_01482 0.23 -0.9 352,218 - H281DRAFT_01482 0.24 -1.1 352,218 - H281DRAFT_01482 0.24 +0.1 352,286 + H281DRAFT_01482 0.29 +0.0 352,286 + H281DRAFT_01482 0.29 -0.8 352,287 - H281DRAFT_01482 0.29 +0.9 352,473 - H281DRAFT_01482 0.42 +0.1 352,653 - H281DRAFT_01482 0.54 +0.4 352,815 - H281DRAFT_01482 0.65 +0.9
Or see this region's nucleotide sequence