Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01446 and H281DRAFT_01447 are separated by 126 nucleotides H281DRAFT_01447 and H281DRAFT_01448 are separated by 5 nucleotides H281DRAFT_01448 and H281DRAFT_01449 are separated by 686 nucleotides
H281DRAFT_01446: H281DRAFT_01446 - transcriptional regulator, LysR family, at 308,648 to 309,523
_01446
H281DRAFT_01447: H281DRAFT_01447 - Threonine/homoserine/homoserine lactone efflux protein, at 309,650 to 310,288
_01447
H281DRAFT_01448: H281DRAFT_01448 - high affinity sulphate transporter 1, at 310,294 to 311,991
_01448
H281DRAFT_01449: H281DRAFT_01449 - RIO kinase 1, at 312,678 to 313,535
_01449
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 309.448 kb on - strand at 309.582 kb on + strand at 309.583 kb on - strand at 309.701 kb on + strand at 309.862 kb on + strand, within H281DRAFT_01447 at 309.863 kb on - strand, within H281DRAFT_01447 at 310.008 kb on - strand, within H281DRAFT_01447 at 310.066 kb on + strand, within H281DRAFT_01447 at 310.408 kb on + strand at 310.497 kb on - strand, within H281DRAFT_01448 at 310.716 kb on + strand, within H281DRAFT_01448 at 310.727 kb on + strand, within H281DRAFT_01448 at 310.728 kb on - strand, within H281DRAFT_01448 at 310.750 kb on + strand, within H281DRAFT_01448 at 310.903 kb on + strand, within H281DRAFT_01448 at 311.569 kb on + strand, within H281DRAFT_01448 at 312.081 kb on + strand at 312.101 kb on + strand at 312.102 kb on - strand at 312.329 kb on + strand at 312.332 kb on + strand at 312.587 kb on + strand at 312.707 kb on - strand at 312.813 kb on + strand, within H281DRAFT_01449
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 309,448 - +0.6 309,582 + +0.1 309,583 - -0.2 309,701 + -0.3 309,862 + H281DRAFT_01447 0.33 +0.1 309,863 - H281DRAFT_01447 0.33 +0.3 310,008 - H281DRAFT_01447 0.56 -0.1 310,066 + H281DRAFT_01447 0.65 -0.2 310,408 + -0.5 310,497 - H281DRAFT_01448 0.12 +0.1 310,716 + H281DRAFT_01448 0.25 +0.7 310,727 + H281DRAFT_01448 0.26 -0.7 310,728 - H281DRAFT_01448 0.26 -0.8 310,750 + H281DRAFT_01448 0.27 -0.1 310,903 + H281DRAFT_01448 0.36 -0.2 311,569 + H281DRAFT_01448 0.75 -0.2 312,081 + -2.8 312,101 + -0.1 312,102 - -0.3 312,329 + +0.6 312,332 + -0.2 312,587 + -1.1 312,707 - +1.7 312,813 + H281DRAFT_01449 0.16 -0.3
Or see this region's nucleotide sequence