Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01439 and H281DRAFT_01440 are separated by 57 nucleotides H281DRAFT_01440 and H281DRAFT_01441 overlap by 4 nucleotides H281DRAFT_01441 and H281DRAFT_01442 are separated by 64 nucleotides
H281DRAFT_01439: H281DRAFT_01439 - DNA polymerase-4, at 298,427 to 299,479
_01439
H281DRAFT_01440: H281DRAFT_01440 - two-component system, OmpR family, heavy metal sensor histidine kinase CusS, at 299,537 to 301,042
_01440
H281DRAFT_01441: H281DRAFT_01441 - two component heavy metal response transcriptional regulator, winged helix family, at 301,039 to 301,725
_01441
H281DRAFT_01442: H281DRAFT_01442 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 301,790 to 303,328
_01442
Position (kb) 299
300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2 at 298.538 kb on + strand, within H281DRAFT_01439 at 298.613 kb on - strand, within H281DRAFT_01439 at 298.647 kb on - strand, within H281DRAFT_01439 at 298.692 kb on + strand, within H281DRAFT_01439 at 298.692 kb on + strand, within H281DRAFT_01439 at 298.692 kb on + strand, within H281DRAFT_01439 at 298.692 kb on + strand, within H281DRAFT_01439 at 298.693 kb on - strand, within H281DRAFT_01439 at 298.758 kb on + strand, within H281DRAFT_01439 at 298.930 kb on + strand, within H281DRAFT_01439 at 299.028 kb on + strand, within H281DRAFT_01439 at 299.049 kb on - strand, within H281DRAFT_01439 at 299.240 kb on + strand, within H281DRAFT_01439 at 299.480 kb on + strand at 299.480 kb on + strand at 299.710 kb on + strand, within H281DRAFT_01440 at 299.711 kb on - strand, within H281DRAFT_01440 at 299.711 kb on - strand, within H281DRAFT_01440 at 300.116 kb on + strand, within H281DRAFT_01440 at 300.425 kb on - strand, within H281DRAFT_01440 at 300.606 kb on + strand, within H281DRAFT_01440 at 300.763 kb on - strand, within H281DRAFT_01440 at 300.796 kb on - strand, within H281DRAFT_01440 at 301.171 kb on - strand, within H281DRAFT_01441
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 298,538 + H281DRAFT_01439 0.11 +0.5 298,613 - H281DRAFT_01439 0.18 -1.0 298,647 - H281DRAFT_01439 0.21 -0.1 298,692 + H281DRAFT_01439 0.25 -2.0 298,692 + H281DRAFT_01439 0.25 +0.6 298,692 + H281DRAFT_01439 0.25 +0.3 298,692 + H281DRAFT_01439 0.25 -0.2 298,693 - H281DRAFT_01439 0.25 +0.7 298,758 + H281DRAFT_01439 0.31 -0.5 298,930 + H281DRAFT_01439 0.48 +0.4 299,028 + H281DRAFT_01439 0.57 -0.2 299,049 - H281DRAFT_01439 0.59 -1.1 299,240 + H281DRAFT_01439 0.77 -1.2 299,480 + +0.5 299,480 + +0.7 299,710 + H281DRAFT_01440 0.11 +0.6 299,711 - H281DRAFT_01440 0.12 +1.1 299,711 - H281DRAFT_01440 0.12 -0.7 300,116 + H281DRAFT_01440 0.38 -0.0 300,425 - H281DRAFT_01440 0.59 +2.0 300,606 + H281DRAFT_01440 0.71 +0.8 300,763 - H281DRAFT_01440 0.81 +0.7 300,796 - H281DRAFT_01440 0.84 -0.5 301,171 - H281DRAFT_01441 0.19 +0.6
Or see this region's nucleotide sequence