Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00898 and H281DRAFT_00899 are separated by 352 nucleotides H281DRAFT_00899 and H281DRAFT_00900 are separated by 145 nucleotides H281DRAFT_00900 and H281DRAFT_00901 are separated by 56 nucleotides H281DRAFT_00901 and H281DRAFT_00902 are separated by 83 nucleotides
H281DRAFT_00898: H281DRAFT_00898 - ATP-dependent proteinase. Serine peptidase. MEROPS family S16, at 995,308 to 997,731
_00898
H281DRAFT_00899: H281DRAFT_00899 - bacterial nucleoid protein Hbs, at 998,084 to 998,356
_00899
H281DRAFT_00900: H281DRAFT_00900 - tRNA_Val_TAC, at 998,502 to 998,577
_00900
H281DRAFT_00901: H281DRAFT_00901 - tRNA_Asp_GTC, at 998,634 to 998,710
_00901
H281DRAFT_00902: H281DRAFT_00902 - peptidyl-prolyl cis-trans isomerase D, at 998,794 to 1,000,731
_00902
Position (kb) 998
999 Strain fitness (log2 ratio) -1
0
1
2 at 997.730 kb on - strand at 997.794 kb on + strand at 997.794 kb on + strand at 997.853 kb on + strand at 997.854 kb on - strand at 997.873 kb on + strand at 997.873 kb on + strand at 997.892 kb on + strand at 997.892 kb on + strand at 997.892 kb on + strand at 997.893 kb on + strand at 997.915 kb on - strand at 997.994 kb on + strand at 997.995 kb on - strand at 998.761 kb on + strand at 998.762 kb on - strand at 998.762 kb on - strand at 999.403 kb on + strand, within H281DRAFT_00902 at 999.500 kb on - strand, within H281DRAFT_00902 at 999.500 kb on - strand, within H281DRAFT_00902
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 997,730 - -0.0 997,794 + -0.4 997,794 + +0.3 997,853 + -0.4 997,854 - -0.0 997,873 + -0.3 997,873 + -0.6 997,892 + +0.5 997,892 + +0.9 997,892 + -1.0 997,893 + +0.7 997,915 - +0.3 997,994 + +0.1 997,995 - +0.7 998,761 + +0.7 998,762 - +0.6 998,762 - +2.1 999,403 + H281DRAFT_00902 0.31 -1.2 999,500 - H281DRAFT_00902 0.36 -0.6 999,500 - H281DRAFT_00902 0.36 -1.4
Or see this region's nucleotide sequence