Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00137 and H281DRAFT_00138 overlap by 4 nucleotides H281DRAFT_00138 and H281DRAFT_00139 are separated by 37 nucleotides H281DRAFT_00139 and H281DRAFT_00140 are separated by 46 nucleotides H281DRAFT_00140 and H281DRAFT_00141 overlap by 16 nucleotides
H281DRAFT_00137: H281DRAFT_00137 - iron complex transport system permease protein, at 142,960 to 144,018
_00137
H281DRAFT_00138: H281DRAFT_00138 - iron complex transport system ATP-binding protein, at 144,015 to 144,854
_00138
H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953
_00139
H281DRAFT_00140: H281DRAFT_00140 - cobalamin-5'-phosphate synthase, at 146,000 to 146,785
_00140
H281DRAFT_00141: H281DRAFT_00141 - alpha-ribazole phosphatase, at 146,770 to 147,360
_00141
Position (kb) 144
145
146 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 143.898 kb on - strand, within H281DRAFT_00137 at 144.236 kb on + strand, within H281DRAFT_00138 at 144.237 kb on - strand, within H281DRAFT_00138 at 144.237 kb on - strand, within H281DRAFT_00138 at 144.237 kb on - strand, within H281DRAFT_00138 at 144.237 kb on - strand, within H281DRAFT_00138 at 144.237 kb on - strand, within H281DRAFT_00138 at 144.436 kb on + strand, within H281DRAFT_00138 at 144.718 kb on + strand, within H281DRAFT_00138 at 144.719 kb on - strand, within H281DRAFT_00138 at 144.877 kb on - strand at 144.930 kb on - strand at 144.951 kb on - strand at 145.054 kb on - strand, within H281DRAFT_00139 at 145.054 kb on - strand, within H281DRAFT_00139 at 145.281 kb on + strand, within H281DRAFT_00139 at 145.747 kb on + strand, within H281DRAFT_00139 at 145.747 kb on + strand at 145.748 kb on - strand, within H281DRAFT_00139 at 145.801 kb on + strand, within H281DRAFT_00139 at 145.824 kb on - strand, within H281DRAFT_00139 at 145.997 kb on + strand at 145.998 kb on - strand at 145.998 kb on - strand at 145.998 kb on - strand at 145.999 kb on + strand at 146.000 kb on - strand at 146.000 kb on - strand at 146.059 kb on - strand at 146.081 kb on + strand, within H281DRAFT_00140 at 146.082 kb on - strand, within H281DRAFT_00140 at 146.094 kb on - strand, within H281DRAFT_00140 at 146.162 kb on + strand, within H281DRAFT_00140 at 146.162 kb on + strand, within H281DRAFT_00140 at 146.469 kb on - strand, within H281DRAFT_00140 at 146.486 kb on + strand, within H281DRAFT_00140 at 146.487 kb on - strand, within H281DRAFT_00140 at 146.548 kb on - strand, within H281DRAFT_00140 at 146.678 kb on + strand, within H281DRAFT_00140 at 146.753 kb on + strand at 146.754 kb on - strand at 146.754 kb on - strand at 146.760 kb on + strand at 146.886 kb on - strand, within H281DRAFT_00141 at 146.886 kb on - strand, within H281DRAFT_00141 at 146.886 kb on - strand, within H281DRAFT_00141
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM remove 143,898 - H281DRAFT_00137 0.89 -1.1 144,236 + H281DRAFT_00138 0.26 -0.5 144,237 - H281DRAFT_00138 0.26 -1.6 144,237 - H281DRAFT_00138 0.26 -1.2 144,237 - H281DRAFT_00138 0.26 +0.2 144,237 - H281DRAFT_00138 0.26 -0.9 144,237 - H281DRAFT_00138 0.26 -0.7 144,436 + H281DRAFT_00138 0.50 -0.5 144,718 + H281DRAFT_00138 0.84 -0.3 144,719 - H281DRAFT_00138 0.84 -0.5 144,877 - -0.0 144,930 - -2.3 144,951 - -2.2 145,054 - H281DRAFT_00139 0.15 -2.4 145,054 - H281DRAFT_00139 0.15 -1.0 145,281 + H281DRAFT_00139 0.37 -1.5 145,747 + H281DRAFT_00139 0.81 -1.2 145,747 + -0.9 145,748 - H281DRAFT_00139 0.81 -1.2 145,801 + H281DRAFT_00139 0.86 -2.2 145,824 - H281DRAFT_00139 0.88 -1.8 145,997 + +0.4 145,998 - -0.5 145,998 - -1.1 145,998 - -1.0 145,999 + -0.7 146,000 - -0.9 146,000 - -0.0 146,059 - -3.6 146,081 + H281DRAFT_00140 0.10 -2.1 146,082 - H281DRAFT_00140 0.10 -2.3 146,094 - H281DRAFT_00140 0.12 -1.1 146,162 + H281DRAFT_00140 0.21 -1.2 146,162 + H281DRAFT_00140 0.21 -3.8 146,469 - H281DRAFT_00140 0.60 -2.1 146,486 + H281DRAFT_00140 0.62 -1.8 146,487 - H281DRAFT_00140 0.62 -3.6 146,548 - H281DRAFT_00140 0.70 -4.6 146,678 + H281DRAFT_00140 0.86 +0.7 146,753 + -3.3 146,754 - -4.1 146,754 - -2.3 146,760 + -3.1 146,886 - H281DRAFT_00141 0.20 -2.0 146,886 - H281DRAFT_00141 0.20 -3.5 146,886 - H281DRAFT_00141 0.20 -2.6
Or see this region's nucleotide sequence