Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03984

Experiment: PYE with Nalidixic 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02961 and CCNA_03983 are separated by 123 nucleotidesCCNA_03983 and CCNA_02962 overlap by 11 nucleotidesCCNA_02962 and CCNA_02963 are separated by 64 nucleotidesCCNA_02963 and CCNA_03984 are separated by 24 nucleotidesCCNA_03984 and CCNA_02964 are separated by 60 nucleotides CCNA_02961: CCNA_02961 - NeuB-family N-acetylneuraminate synthase, at 3,117,581 to 3,118,651 _02961 CCNA_03983: CCNA_03983 - HicA-related toxin-antitoxin protein, at 3,118,775 to 3,119,035 _03983 CCNA_02962: CCNA_02962 - HicB-family RNAse H fold protein, at 3,119,025 to 3,119,252 _02962 CCNA_02963: CCNA_02963 - hypothetical protein, at 3,119,317 to 3,119,577 _02963 CCNA_03984: CCNA_03984 - hypothetical protein, at 3,119,602 to 3,119,790 _03984 CCNA_02964: CCNA_02964 - thioredoxin-disulfide reductase, at 3,119,851 to 3,120,858 _02964 Position (kb) 3119 3120Strain fitness (log2 ratio) -2 -1 0 1 2at 3118.630 kb on + strandat 3118.642 kb on + strandat 3118.648 kb on + strandat 3118.650 kb on - strandat 3118.671 kb on - strandat 3118.671 kb on - strandat 3118.777 kb on + strandat 3118.868 kb on + strand, within CCNA_03983at 3118.875 kb on + strand, within CCNA_03983at 3118.995 kb on - strand, within CCNA_03983at 3119.245 kb on + strandat 3119.245 kb on + strandat 3119.253 kb on - strandat 3119.264 kb on - strandat 3119.301 kb on - strandat 3119.313 kb on + strandat 3119.366 kb on + strand, within CCNA_02963at 3119.473 kb on + strand, within CCNA_02963at 3119.484 kb on + strand, within CCNA_02963at 3119.484 kb on + strand, within CCNA_02963at 3119.492 kb on - strand, within CCNA_02963at 3119.550 kb on - strand, within CCNA_02963at 3119.585 kb on + strandat 3119.636 kb on + strand, within CCNA_03984at 3119.644 kb on - strand, within CCNA_03984at 3119.655 kb on + strand, within CCNA_03984at 3119.707 kb on + strand, within CCNA_03984at 3119.742 kb on - strand, within CCNA_03984at 3119.756 kb on + strand, within CCNA_03984at 3119.767 kb on + strand, within CCNA_03984at 3119.778 kb on - strandat 3119.780 kb on - strandat 3119.793 kb on + strandat 3119.830 kb on + strandat 3119.837 kb on + strandat 3119.843 kb on - strandat 3119.845 kb on - strandat 3119.852 kb on + strandat 3119.852 kb on + strandat 3120.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
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3,118,630 + -2.5
3,118,642 + +1.7
3,118,648 + -1.8
3,118,650 - -0.5
3,118,671 - +1.7
3,118,671 - -0.3
3,118,777 + -0.6
3,118,868 + CCNA_03983 0.36 -0.6
3,118,875 + CCNA_03983 0.38 +0.5
3,118,995 - CCNA_03983 0.84 +0.5
3,119,245 + +0.2
3,119,245 + +2.0
3,119,253 - +1.0
3,119,264 - -0.6
3,119,301 - +0.2
3,119,313 + +1.2
3,119,366 + CCNA_02963 0.19 +1.1
3,119,473 + CCNA_02963 0.60 -1.4
3,119,484 + CCNA_02963 0.64 -0.5
3,119,484 + CCNA_02963 0.64 +0.2
3,119,492 - CCNA_02963 0.67 +0.7
3,119,550 - CCNA_02963 0.89 +0.5
3,119,585 + -0.9
3,119,636 + CCNA_03984 0.18 +1.8
3,119,644 - CCNA_03984 0.22 +1.1
3,119,655 + CCNA_03984 0.28 +1.7
3,119,707 + CCNA_03984 0.56 +0.5
3,119,742 - CCNA_03984 0.74 -1.0
3,119,756 + CCNA_03984 0.81 +0.7
3,119,767 + CCNA_03984 0.87 -1.1
3,119,778 - +2.1
3,119,780 - +0.4
3,119,793 + -1.9
3,119,830 + -0.4
3,119,837 + -0.9
3,119,843 - +0.3
3,119,845 - -2.5
3,119,852 + +0.9
3,119,852 + +0.5
3,120,786 + +1.4

Or see this region's nucleotide sequence