Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03929 and CCNA_00718 are separated by 52 nucleotides CCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03930 and CCNA_03931 are separated by 542 nucleotides CCNA_03931 and CCNA_03932 are separated by 2 nucleotides
CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834
_03929
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894
_03930
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
Position (kb) 772
773 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 771.806 kb on + strand, within CCNA_03929 at 771.810 kb on - strand, within CCNA_03929 at 771.840 kb on - strand at 771.852 kb on + strand at 771.869 kb on - strand at 771.875 kb on + strand at 771.886 kb on + strand at 771.893 kb on - strand at 771.893 kb on - strand at 771.901 kb on - strand at 771.913 kb on + strand at 771.921 kb on - strand at 771.940 kb on - strand at 771.962 kb on - strand at 771.962 kb on - strand at 771.963 kb on - strand at 771.976 kb on + strand at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.007 kb on + strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.020 kb on - strand, within CCNA_00718 at 772.066 kb on + strand, within CCNA_00718 at 772.100 kb on + strand, within CCNA_00718 at 772.107 kb on - strand, within CCNA_00718 at 772.115 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.169 kb on - strand, within CCNA_00718 at 772.212 kb on + strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.229 kb on + strand, within CCNA_00718 at 772.285 kb on + strand, within CCNA_00718 at 772.341 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.356 kb on + strand, within CCNA_00718 at 772.358 kb on + strand, within CCNA_00718 at 772.366 kb on + strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.390 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.455 kb on - strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.471 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.565 kb on + strand, within CCNA_00718 at 772.631 kb on + strand, within CCNA_00718 at 772.639 kb on - strand, within CCNA_00718 at 772.646 kb on - strand, within CCNA_00718 at 772.646 kb on - strand at 772.690 kb on + strand, within CCNA_00718 at 772.698 kb on - strand at 772.698 kb on - strand at 772.711 kb on - strand at 772.711 kb on - strand at 772.747 kb on + strand at 772.752 kb on + strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.808 kb on - strand, within CCNA_03930 at 772.812 kb on + strand, within CCNA_03930 at 772.842 kb on + strand, within CCNA_03930 at 772.847 kb on + strand, within CCNA_03930 at 772.850 kb on - strand, within CCNA_03930 at 772.852 kb on + strand at 772.860 kb on - strand, within CCNA_03930 at 772.860 kb on - strand, within CCNA_03930 at 772.866 kb on + strand, within CCNA_03930 at 772.869 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.897 kb on - strand at 772.956 kb on + strand at 772.956 kb on + strand at 772.964 kb on - strand at 772.969 kb on + strand at 772.985 kb on + strand at 772.985 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 773.010 kb on - strand at 773.030 kb on - strand at 773.076 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.095 kb on - strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.118 kb on - strand at 773.120 kb on + strand at 773.126 kb on - strand at 773.126 kb on - strand at 773.128 kb on - strand at 773.161 kb on + strand at 773.184 kb on - strand at 773.192 kb on + strand at 773.193 kb on + strand at 773.193 kb on + strand at 773.202 kb on - strand at 773.202 kb on - strand at 773.213 kb on + strand at 773.213 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.268 kb on - strand at 773.269 kb on - strand at 773.270 kb on + strand at 773.270 kb on + strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.279 kb on - strand at 773.279 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.742 kb on + strand at 773.749 kb on + strand at 773.767 kb on - strand, within CCNA_03932 at 773.791 kb on - strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.828 kb on + strand, within CCNA_03932 at 773.833 kb on + strand, within CCNA_03932 at 773.841 kb on - strand, within CCNA_03932 at 773.851 kb on - strand, within CCNA_03932 at 773.870 kb on - strand, within CCNA_03932 at 773.891 kb on + strand, within CCNA_03932
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 771,806 + CCNA_03929 0.75 +1.5 771,810 - CCNA_03929 0.78 +0.8 771,840 - -1.3 771,852 + -0.5 771,869 - -0.2 771,875 + +2.1 771,886 + +0.3 771,893 - +0.3 771,893 - +1.7 771,901 - +1.4 771,913 + +0.9 771,921 - +0.1 771,940 - -3.4 771,962 - +1.1 771,962 - +1.7 771,963 - +0.3 771,976 + +1.4 771,984 - CCNA_00718 0.11 +3.0 771,984 - CCNA_00718 0.11 +0.7 771,984 - CCNA_00718 0.11 -0.6 772,005 + CCNA_00718 0.13 +1.5 772,005 + CCNA_00718 0.13 +2.6 772,005 + CCNA_00718 0.13 -0.2 772,005 + CCNA_00718 0.13 +1.8 772,005 + CCNA_00718 0.13 +1.8 772,005 + CCNA_00718 0.13 +1.9 772,007 + CCNA_00718 0.13 -1.1 772,013 - CCNA_00718 0.14 -0.4 772,013 - CCNA_00718 0.14 +0.9 772,013 - CCNA_00718 0.14 +0.3 772,013 - CCNA_00718 0.14 -1.0 772,013 - CCNA_00718 0.14 -0.3 772,013 - CCNA_00718 0.14 +2.3 772,013 - CCNA_00718 0.14 +0.1 772,013 - CCNA_00718 0.14 -0.4 772,020 - CCNA_00718 0.15 -1.4 772,066 + CCNA_00718 0.20 +0.7 772,100 + CCNA_00718 0.24 -0.7 772,107 - CCNA_00718 0.25 -1.8 772,115 + CCNA_00718 0.25 +2.5 772,130 + CCNA_00718 0.27 +1.6 772,130 + CCNA_00718 0.27 +1.9 772,130 + CCNA_00718 0.27 +1.1 772,130 + CCNA_00718 0.27 -0.4 772,169 - CCNA_00718 0.31 -1.3 772,212 + CCNA_00718 0.36 +0.1 772,218 - CCNA_00718 0.37 -1.5 772,218 - CCNA_00718 0.37 +0.2 772,218 - CCNA_00718 0.37 -1.7 772,229 + CCNA_00718 0.38 +0.9 772,285 + CCNA_00718 0.44 -0.9 772,341 - CCNA_00718 0.51 -0.5 772,355 - CCNA_00718 0.52 +0.1 772,355 - CCNA_00718 0.52 -1.1 772,356 + CCNA_00718 0.52 +0.5 772,358 + CCNA_00718 0.53 -1.1 772,366 + CCNA_00718 0.53 -0.4 772,389 - CCNA_00718 0.56 +1.3 772,389 - CCNA_00718 0.56 -0.8 772,389 - CCNA_00718 0.56 -1.6 772,390 - CCNA_00718 0.56 +0.8 772,432 - CCNA_00718 0.61 -0.2 772,432 - CCNA_00718 0.61 +1.6 772,432 - CCNA_00718 0.61 -1.2 772,447 + CCNA_00718 0.62 -0.4 772,447 + CCNA_00718 0.62 -0.2 772,455 - CCNA_00718 0.63 -0.3 772,468 + CCNA_00718 0.65 -1.2 772,468 + CCNA_00718 0.65 +0.0 772,468 + CCNA_00718 0.65 -1.3 772,468 + CCNA_00718 0.65 -0.4 772,468 + CCNA_00718 0.65 +1.0 772,468 + CCNA_00718 0.65 -1.5 772,468 + CCNA_00718 0.65 -1.4 772,471 - CCNA_00718 0.65 -2.8 772,476 - CCNA_00718 0.66 +0.3 772,476 - CCNA_00718 0.66 -3.1 772,476 - CCNA_00718 0.66 +0.1 772,476 - CCNA_00718 0.66 -0.5 772,476 - CCNA_00718 0.66 +2.0 772,476 - CCNA_00718 0.66 -1.2 772,476 - CCNA_00718 0.66 +0.9 772,476 - CCNA_00718 0.66 +1.2 772,565 + CCNA_00718 0.76 -2.1 772,631 + CCNA_00718 0.83 -0.6 772,639 - CCNA_00718 0.84 +3.1 772,646 - CCNA_00718 0.85 +2.3 772,646 - +2.1 772,690 + CCNA_00718 0.90 +0.4 772,698 - -1.3 772,698 - -0.7 772,711 - -0.3 772,711 - +0.2 772,747 + +0.1 772,752 + -1.9 772,795 - +0.4 772,795 - +0.4 772,795 - +1.2 772,795 - -0.7 772,808 - CCNA_03930 0.17 -0.6 772,812 + CCNA_03930 0.21 +0.3 772,842 + CCNA_03930 0.50 -0.3 772,847 + CCNA_03930 0.54 +0.0 772,850 - CCNA_03930 0.57 -2.9 772,852 + +0.9 772,860 - CCNA_03930 0.67 +0.5 772,860 - CCNA_03930 0.67 -2.3 772,866 + CCNA_03930 0.72 -0.5 772,869 - CCNA_03930 0.75 -0.5 772,874 - CCNA_03930 0.80 -0.1 772,874 - CCNA_03930 0.80 -0.7 772,897 - -0.3 772,956 + -0.4 772,956 + +0.3 772,964 - -2.7 772,969 + -2.8 772,985 + +0.7 772,985 + +0.9 772,991 + +0.6 772,991 + -1.1 772,991 + +2.6 772,999 - -1.9 772,999 - -1.6 772,999 - +5.0 772,999 - +0.9 773,010 - -3.8 773,030 - +0.4 773,076 - +0.1 773,080 + +1.4 773,094 + -1.4 773,095 - -0.2 773,101 - -1.3 773,102 - -3.8 773,102 - -0.9 773,102 - -1.1 773,118 - -1.9 773,120 + +1.3 773,126 - -2.6 773,126 - +0.4 773,128 - -3.4 773,161 + -0.3 773,184 - +0.2 773,192 + -2.4 773,193 + +1.6 773,193 + -0.0 773,202 - -0.4 773,202 - +1.5 773,213 + +0.5 773,213 + -0.4 773,221 - +0.0 773,221 - -3.1 773,248 + +0.9 773,248 + -0.4 773,248 + +0.7 773,248 + +1.1 773,249 + -0.1 773,249 + +1.9 773,249 + -0.5 773,249 + -1.4 773,249 + +1.9 773,256 - +2.4 773,256 - +0.1 773,257 - +0.0 773,257 - -1.1 773,257 - -0.2 773,257 - +1.6 773,257 - -1.9 773,257 - +0.2 773,257 - +0.7 773,257 - +0.7 773,268 - -0.9 773,269 - -3.1 773,270 + +0.8 773,270 + -1.8 773,271 + -0.1 773,278 - +0.3 773,279 - +1.2 773,279 - +0.8 773,309 - -0.9 773,309 - -1.4 773,309 - +0.3 773,732 + +0.5 773,732 + -1.8 773,740 - +2.8 773,740 - +0.4 773,740 - +1.6 773,742 + -2.1 773,749 + -1.2 773,767 - CCNA_03932 0.13 -3.1 773,791 - CCNA_03932 0.23 +0.7 773,793 + CCNA_03932 0.24 -0.3 773,793 + CCNA_03932 0.24 -1.0 773,801 - CCNA_03932 0.27 -1.0 773,801 - CCNA_03932 0.27 -3.3 773,801 - CCNA_03932 0.27 -3.6 773,801 - CCNA_03932 0.27 +0.7 773,801 - CCNA_03932 0.27 -4.9 773,828 + CCNA_03932 0.37 -1.7 773,833 + CCNA_03932 0.39 -1.6 773,841 - CCNA_03932 0.42 -2.3 773,851 - CCNA_03932 0.46 -3.5 773,870 - CCNA_03932 0.54 -2.8 773,891 + CCNA_03932 0.62 -2.0
Or see this region's nucleotide sequence