Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03910

Experiment: PYE with Nalidixic 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03652 and CCNA_03653 are separated by 123 nucleotidesCCNA_03653 and CCNA_03910 are separated by 212 nucleotidesCCNA_03910 and CCNA_03655 are separated by 85 nucleotides CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310 _03652 CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766 _03653 CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086 _03910 CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3814.981 kb on - strandat 3814.983 kb on + strandat 3814.988 kb on + strandat 3814.991 kb on - strandat 3815.014 kb on - strandat 3815.038 kb on + strandat 3815.040 kb on - strandat 3815.044 kb on + strandat 3815.062 kb on - strandat 3815.170 kb on - strandat 3815.230 kb on + strandat 3815.235 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.249 kb on + strandat 3815.257 kb on - strandat 3815.277 kb on + strandat 3815.285 kb on + strandat 3815.305 kb on + strandat 3815.305 kb on + strandat 3815.305 kb on + strandat 3815.312 kb on - strandat 3815.313 kb on - strandat 3815.336 kb on + strandat 3815.344 kb on - strandat 3815.378 kb on - strandat 3815.420 kb on + strandat 3815.425 kb on + strandat 3815.428 kb on - strandat 3815.770 kb on + strandat 3815.800 kb on - strandat 3815.860 kb on + strandat 3815.923 kb on + strandat 3815.936 kb on - strandat 3815.938 kb on + strandat 3816.004 kb on + strand, within CCNA_03910at 3816.012 kb on - strand, within CCNA_03910at 3816.069 kb on + strand, within CCNA_03910at 3816.145 kb on - strandat 3816.155 kb on - strandat 3816.159 kb on - strandat 3816.169 kb on + strandat 3816.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
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3,814,981 - -1.8
3,814,983 + -1.6
3,814,988 + +1.4
3,814,991 - -1.1
3,815,014 - +1.2
3,815,038 + -0.5
3,815,040 - -0.7
3,815,044 + -0.8
3,815,062 - -1.6
3,815,170 - +1.4
3,815,230 + -0.5
3,815,235 + +0.3
3,815,249 + +0.3
3,815,249 + -1.0
3,815,249 + -1.9
3,815,249 + +0.0
3,815,249 + -0.9
3,815,249 + -0.3
3,815,249 + -0.7
3,815,257 - +0.0
3,815,277 + -4.0
3,815,285 + -0.7
3,815,305 + +2.1
3,815,305 + -1.5
3,815,305 + +0.4
3,815,312 - +1.2
3,815,313 - +2.7
3,815,336 + +0.2
3,815,344 - +0.3
3,815,378 - -2.9
3,815,420 + -1.4
3,815,425 + +0.4
3,815,428 - -1.8
3,815,770 + +0.2
3,815,800 - +1.2
3,815,860 + +2.2
3,815,923 + +0.5
3,815,936 - -0.8
3,815,938 + +1.9
3,816,004 + CCNA_03910 0.23 +0.9
3,816,012 - CCNA_03910 0.31 -2.6
3,816,069 + CCNA_03910 0.83 +3.6
3,816,145 - -0.5
3,816,155 - +0.6
3,816,159 - -0.4
3,816,169 + -0.6
3,816,177 - +1.6

Or see this region's nucleotide sequence