Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03874

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
4,035,738	+		CCNA_03872	0.57	-0.7
4,035,746	-		CCNA_03872	0.57	-0.7
4,035,746	-		CCNA_03872	0.57	-2.2
4,035,770	+		CCNA_03872	0.59	-1.6
4,035,820	-		CCNA_03872	0.63	-2.1
4,035,826	-		CCNA_03872	0.63	-1.0
4,035,855	+				+1.2
4,035,885	-		CCNA_03872	0.67	-0.6
4,035,900	-		CCNA_03872	0.68	-3.3
4,035,900	-		CCNA_03872	0.68	-0.2
4,035,911	+		CCNA_03872	0.69	+0.2
4,035,940	-		CCNA_03872	0.71	+0.4
4,035,940	-		CCNA_03872	0.71	-1.0
4,036,021	-		CCNA_03872	0.77	-1.7
4,036,071	+		CCNA_03872	0.81	-0.9
4,036,081	+		CCNA_03872	0.82	-0.7
4,036,316	+				+1.5
4,036,341	+		CCNA_03873	0.13	+0.1
4,036,364	-		CCNA_03873	0.22	-0.3
4,036,376	+				+0.6
4,036,450	-		CCNA_03873	0.55	-2.2
4,036,465	-		CCNA_03873	0.61	-0.7
4,036,467	+		CCNA_03873	0.62	+0.5
4,036,467	+		CCNA_03873	0.62	-0.4
4,036,467	+		CCNA_03873	0.62	+0.6
4,036,467	+		CCNA_03873	0.62	-0.5
4,036,468	-		CCNA_03873	0.62	-0.6
4,036,498	+		CCNA_03873	0.74	-2.0
4,036,498	+		CCNA_03873	0.74	-1.9
4,036,498	+		CCNA_03873	0.74	+0.3
4,036,508	+		CCNA_03873	0.78	-0.4
4,036,516	-		CCNA_03873	0.81	+0.3
4,036,544	-				-2.4
4,036,577	-				-2.2
4,036,602	+				+3.1
4,036,610	-				+1.4
4,036,616	+				-0.9
4,036,616	+				-0.6
4,036,621	+				-1.0
4,036,621	+				+1.2
4,036,621	+				+1.3
4,036,621	+				+1.4
4,036,621	+				+1.8
4,036,621	+				+0.3
4,036,621	+				-1.5
4,036,621	+				-2.9
4,036,621	+				+0.6
4,036,629	-				+0.2
4,036,629	-				+2.5
4,036,629	-				-0.6
4,036,629	-				+1.5
4,036,629	-				+1.2
4,036,629	-				-0.5
4,036,629	-				-1.8
4,036,629	-				+1.8
4,036,644	-				+0.7
4,036,657	+				+2.6
4,036,693	-				+4.4
4,036,711	-				+0.6
4,036,750	+				-1.6
4,036,786	-		CCNA_03874	0.14	+0.2
4,036,786	-		CCNA_03874	0.14	+1.6
4,036,802	-		CCNA_03874	0.16	+1.9
4,036,817	+		CCNA_03874	0.18	-0.4
4,036,841	+		CCNA_03874	0.22	-0.4
4,036,849	-		CCNA_03874	0.23	+3.2
4,036,849	-		CCNA_03874	0.23	-1.6
4,036,863	+		CCNA_03874	0.25	-2.3
4,036,876	-		CCNA_03874	0.27	-1.5
4,036,881	-		CCNA_03874	0.27	-0.2
4,036,902	+		CCNA_03874	0.30	-0.7
4,036,907	+		CCNA_03874	0.31	+0.2
4,036,945	+		CCNA_03874	0.36	-1.4
4,036,953	-		CCNA_03874	0.38	-0.6
4,036,953	-		CCNA_03874	0.38	+1.0
4,037,011	+		CCNA_03874	0.46	-0.7
4,037,012	-		CCNA_03874	0.46	-0.1
4,037,069	+		CCNA_03874	0.54	-2.4
4,037,091	-		CCNA_03874	0.57	-2.2
4,037,116	-		CCNA_03874	0.61	-1.6
4,037,194	+		CCNA_03874	0.72	+0.1
4,037,279	+		CCNA_03874	0.84	-2.0
4,037,280	+		CCNA_03874	0.85	+0.9
4,037,287	-		CCNA_03874	0.86	+0.9
4,037,287	-		CCNA_03874	0.86	-0.5
4,037,287	-		CCNA_03874	0.86	+0.7
4,037,293	-		CCNA_03874	0.86	-2.4
4,037,305	+		CCNA_03874	0.88	+0.3
4,037,314	-		CCNA_03874	0.90	-2.9
4,037,354	+				-0.5
4,037,354	+				+1.3
4,037,375	+				+1.0
4,037,383	-				-1.6
4,037,411	-				-2.5
4,037,433	-				-1.8
4,037,433	-				-1.6
4,037,449	-				+0.1
4,037,451	+				-0.3
4,037,459	-				-1.1
4,037,470	-				+1.0
4,037,475	-				+1.1
4,037,497	+		CCNA_03875	0.11	+0.9
4,037,497	+		CCNA_03875	0.11	+0.7
4,037,505	-		CCNA_03875	0.12	+0.0
4,037,509	+		CCNA_03875	0.13	+0.4
4,037,516	+		CCNA_03875	0.13	+1.5
4,037,524	-		CCNA_03875	0.14	-3.4
4,037,564	+		CCNA_03875	0.18	+0.5
4,037,584	+		CCNA_03875	0.20	+0.2
4,037,592	-		CCNA_03875	0.21	-3.0
4,037,613	+		CCNA_03875	0.23	-3.4
4,037,613	+				+2.2
4,037,613	+		CCNA_03875	0.23	+0.3
4,037,621	-		CCNA_03875	0.24	-0.9
4,037,621	-		CCNA_03875	0.24	-0.9
4,037,630	+		CCNA_03875	0.25	+1.7
4,037,643	-		CCNA_03875	0.27	-1.1
4,037,717	+		CCNA_03875	0.34	-1.7
4,037,719	-		CCNA_03875	0.34	-2.4
4,037,726	-		CCNA_03875	0.35	+1.0
4,037,742	+		CCNA_03875	0.37	-3.2
4,037,742	+		CCNA_03875	0.37	-1.0
4,037,742	+		CCNA_03875	0.37	+0.3
4,037,742	+		CCNA_03875	0.37	+1.1
4,037,742	+		CCNA_03875	0.37	-0.3
4,037,748	+		CCNA_03875	0.37	+1.1
4,037,750	-		CCNA_03875	0.38	+0.8
4,037,750	-		CCNA_03875	0.38	-3.2
4,037,750	-		CCNA_03875	0.38	+0.5
4,037,806	+		CCNA_03875	0.43	-3.0
4,037,806	+		CCNA_03875	0.43	+1.0
4,037,814	-		CCNA_03875	0.44	-0.8
4,037,814	-		CCNA_03875	0.44	-1.2
4,037,844	-		CCNA_03875	0.47	-1.0
4,037,863	+		CCNA_03875	0.49	+0.6
4,037,864	-		CCNA_03875	0.49	-1.6
4,037,873	+		CCNA_03875	0.50	+2.3
4,037,886	-		CCNA_03875	0.52	-2.8
4,037,897	-		CCNA_03875	0.53	+3.3
4,037,907	+		CCNA_03875	0.54	+0.0
4,038,077	-		CCNA_03875	0.72	-2.4
4,038,103	+		CCNA_03875	0.74	-3.2
4,038,111	-		CCNA_03875	0.75	-0.1
4,038,116	+		CCNA_03875	0.76	+0.9
4,038,161	+		CCNA_03875	0.80	-1.1
4,038,161	+		CCNA_03875	0.80	+1.3
4,038,236	+		CCNA_03875	0.88	+1.7
4,038,263	+				-0.4
4,038,270	-				-2.3
4,038,270	-				-2.0
4,038,288	-				-1.1
4,038,293	-				+2.0
4,038,304	+				+0.0
4,038,329	+				+0.7
4,038,337	-				-2.1
4,038,337	-				+2.3
4,038,342	-				+0.9
4,038,347	+				-0.2
4,038,361	+				+1.4
4,038,361	+				-0.8