Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01846

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,976,625	-		CCNA_01844	0.71	+1.0
1,976,625	-		CCNA_01844	0.71	+0.6
1,976,626	-		CCNA_01844	0.72	+0.0
1,976,633	-		CCNA_01844	0.73	-0.3
1,976,633	-		CCNA_01844	0.73	+0.9
1,976,649	+		CCNA_01844	0.75	-0.6
1,976,674	-		CCNA_01844	0.79	-1.3
1,976,729	-		CCNA_01844	0.88	+1.4
1,976,734	+		CCNA_01844	0.89	+4.3
1,976,734	+		CCNA_01844	0.89	-0.8
1,976,777	-				+1.8
1,976,810	-				-0.4
1,976,810	-				-1.1
1,976,831	+				+2.9
1,976,837	-				+0.6
1,976,849	+				+2.3
1,976,851	-				-1.2
1,976,862	-				+1.4
1,976,864	+				+3.5
1,976,892	-				+0.2
1,976,924	+				-1.7
1,976,929	+				-0.1
1,976,950	-				+1.2
1,976,971	+				+1.1
1,977,050	-				+0.2
1,977,084	-				-1.0
1,977,123	+				+1.3
1,977,123	+				+0.6
1,977,131	-				-0.1
1,977,131	-				+0.8
1,977,139	-				-1.6
1,977,153	+		CCNA_01845	0.13	+0.6
1,977,190	+		CCNA_01845	0.19	+3.6
1,977,212	+		CCNA_01845	0.24	-0.3
1,977,256	+		CCNA_01845	0.32	+2.8
1,977,294	+		CCNA_01845	0.39	+1.6
1,977,302	-		CCNA_01845	0.40	+1.1
1,977,303	+		CCNA_01845	0.41	+0.4
1,977,329	-		CCNA_01845	0.46	+2.0
1,977,391	+		CCNA_01845	0.57	+2.1
1,977,399	-		CCNA_01845	0.59	+1.8
1,977,423	-		CCNA_01845	0.63	+0.3
1,977,425	+		CCNA_01845	0.63	+2.5
1,977,425	+		CCNA_01845	0.63	-0.8
1,977,433	-		CCNA_01845	0.65	+0.2
1,977,433	-		CCNA_01845	0.65	+1.0
1,977,433	-		CCNA_01845	0.65	+2.2
1,977,433	-		CCNA_01845	0.65	+0.1
1,977,433	-		CCNA_01845	0.65	+1.5
1,977,448	+		CCNA_01845	0.68	+1.3
1,977,456	-		CCNA_01845	0.69	+0.6
1,977,475	+		CCNA_01845	0.73	+0.4
1,977,506	+		CCNA_01845	0.79	+2.1
1,977,513	-		CCNA_01845	0.80	+2.9
1,977,529	+		CCNA_01845	0.83	+0.3
1,977,636	-				-2.1
1,977,718	+				+1.9
1,977,724	-				+2.2
1,977,754	+		CCNA_01846	0.11	+1.9
1,977,761	+		CCNA_01846	0.11	-1.4
1,977,761	+		CCNA_01846	0.11	+2.8
1,977,771	+		CCNA_01846	0.12	+0.2
1,977,771	+		CCNA_01846	0.12	+2.6
1,977,771	+		CCNA_01846	0.12	+1.0
1,977,777	-		CCNA_01846	0.12	+2.4
1,977,779	-		CCNA_01846	0.12	+1.9
1,977,779	-		CCNA_01846	0.12	-0.4
1,977,800	-				+3.8
1,977,817	+		CCNA_01846	0.15	+0.9
1,977,838	+		CCNA_01846	0.17	+1.4
1,977,846	-		CCNA_01846	0.17	+1.4
1,977,872	+		CCNA_01846	0.19	+2.3
1,977,880	-		CCNA_01846	0.20	+0.6
1,977,893	+		CCNA_01846	0.21	+2.8
1,977,893	+		CCNA_01846	0.21	+1.0
1,977,901	-		CCNA_01846	0.21	+1.1
1,977,906	+		CCNA_01846	0.22	+2.7
1,977,906	+		CCNA_01846	0.22	+2.0
1,977,906	+		CCNA_01846	0.22	-1.4
1,977,914	-		CCNA_01846	0.22	+1.0
1,977,914	-		CCNA_01846	0.22	-0.2
1,977,918	+		CCNA_01846	0.23	+1.5
1,977,929	+		CCNA_01846	0.24	+3.6
1,977,964	-		CCNA_01846	0.26	+0.8
1,978,028	-		CCNA_01846	0.31	-1.4
1,978,028	-		CCNA_01846	0.31	+2.0
1,978,051	+		CCNA_01846	0.33	+0.9
1,978,057	+		CCNA_01846	0.33	+2.8
1,978,070	-		CCNA_01846	0.34	+0.4
1,978,072	-		CCNA_01846	0.34	-1.0
1,978,107	+		CCNA_01846	0.37	+0.1
1,978,115	+		CCNA_01846	0.37	+2.5
1,978,121	-		CCNA_01846	0.38	+0.6
1,978,146	+		CCNA_01846	0.40	+3.1
1,978,151	-		CCNA_01846	0.40	+0.7
1,978,166	-		CCNA_01846	0.41	+1.1
1,978,171	-		CCNA_01846	0.41	+1.6
1,978,190	-		CCNA_01846	0.43	-1.2
1,978,222	-		CCNA_01846	0.45	+2.6
1,978,224	+		CCNA_01846	0.45	+2.5
1,978,226	+		CCNA_01846	0.46	+3.8
1,978,231	+		CCNA_01846	0.46	+1.9
1,978,234	-		CCNA_01846	0.46	-0.3
1,978,290	-		CCNA_01846	0.50	+2.8
1,978,292	+		CCNA_01846	0.50	+1.2
1,978,315	-		CCNA_01846	0.52	+3.0
1,978,336	-		CCNA_01846	0.54	+3.7
1,978,343	+		CCNA_01846	0.54	+1.3
1,978,346	-		CCNA_01846	0.54	+0.1
1,978,348	+		CCNA_01846	0.55	-0.4
1,978,351	-		CCNA_01846	0.55	-0.4
1,978,356	-				+2.1
1,978,450	-		CCNA_01846	0.62	+2.1
1,978,452	-		CCNA_01846	0.62	-1.4
1,978,474	+		CCNA_01846	0.64	-1.0
1,978,479	+		CCNA_01846	0.64	-1.6
1,978,556	+		CCNA_01846	0.70	-0.0
1,978,579	-		CCNA_01846	0.72	+1.2
1,978,631	-		CCNA_01846	0.76	-0.4
1,978,669	-		CCNA_01846	0.78	+2.1
1,978,669	-		CCNA_01846	0.78	+2.5
1,978,669	-		CCNA_01846	0.78	+1.7
1,978,669	-		CCNA_01846	0.78	+1.7
1,978,669	-		CCNA_01846	0.78	+2.0
1,978,701	-		CCNA_01846	0.81	-0.9
1,978,711	-		CCNA_01846	0.82	+2.7
1,978,713	-		CCNA_01846	0.82	-1.3
1,978,795	-		CCNA_01846	0.88	-1.7
1,978,797	+		CCNA_01846	0.88	+1.8
1,978,805	-		CCNA_01846	0.89	-0.7
1,978,805	-		CCNA_01846	0.89	-2.6
1,978,832	+				+0.4
1,978,839	-				-0.0
1,978,887	+				-0.0
1,978,914	-				+3.4
1,978,930	+				+0.4
1,978,942	-				+0.3
1,978,942	-				-0.2
1,978,962	+				-1.5
1,978,969	+				-0.5
1,978,977	-				+1.4
1,978,991	+				+0.1
1,979,007	-				-2.4
1,979,024	-				+0.2
1,979,037	+		CCNA_01847	0.11	-2.3
1,979,037	+		CCNA_01847	0.11	+1.7
1,979,045	-		CCNA_01847	0.12	+0.3
1,979,045	-		CCNA_01847	0.12	+0.5
1,979,045	-		CCNA_01847	0.12	-2.5
1,979,050	-		CCNA_01847	0.13	+2.3
1,979,052	+		CCNA_01847	0.13	+2.5
1,979,060	-		CCNA_01847	0.14	+0.0
1,979,090	-		CCNA_01847	0.18	-0.6
1,979,134	-		CCNA_01847	0.24	+0.5
1,979,141	+		CCNA_01847	0.25	+0.2
1,979,149	-		CCNA_01847	0.26	+0.1
1,979,161	+		CCNA_01847	0.28	+2.0
1,979,211	+		CCNA_01847	0.35	+0.2
1,979,241	-		CCNA_01847	0.39	-0.4
1,979,286	+		CCNA_01847	0.45	+1.8
1,979,287	-		CCNA_01847	0.45	-0.9
1,979,294	-		CCNA_01847	0.46	+0.3
1,979,342	+		CCNA_01847	0.52	-0.4
1,979,343	-		CCNA_01847	0.53	+0.5
1,979,361	+		CCNA_01847	0.55	+2.7
1,979,361	+		CCNA_01847	0.55	-0.1
1,979,366	+		CCNA_01847	0.56	+0.1
1,979,366	+		CCNA_01847	0.56	+2.4
1,979,366	+		CCNA_01847	0.56	+0.6
1,979,366	+		CCNA_01847	0.56	-0.7
1,979,369	-		CCNA_01847	0.56	+0.8
1,979,369	-		CCNA_01847	0.56	+0.6
1,979,369	-		CCNA_01847	0.56	+0.6
1,979,369	-		CCNA_01847	0.56	+1.7
1,979,374	-		CCNA_01847	0.57	+1.5
1,979,374	-		CCNA_01847	0.57	+1.0
1,979,374	-		CCNA_01847	0.57	-1.5
1,979,374	-		CCNA_01847	0.57	+1.9
1,979,374	-		CCNA_01847	0.57	+0.9
1,979,404	-		CCNA_01847	0.61	+0.1
1,979,426	-		CCNA_01847	0.64	-1.3
1,979,432	-		CCNA_01847	0.65	+0.6
1,979,462	+		CCNA_01847	0.69	-0.4
1,979,465	+		CCNA_01847	0.69	+1.2
1,979,468	-		CCNA_01847	0.70	-0.3
1,979,470	-		CCNA_01847	0.70	-1.7
1,979,485	-		CCNA_01847	0.72	+1.1
1,979,495	-		CCNA_01847	0.73	-1.8
1,979,516	-		CCNA_01847	0.76	+0.8
1,979,521	-				+2.1
1,979,564	-		CCNA_01847	0.83	+1.9
1,979,564	-		CCNA_01847	0.83	+0.6
1,979,565	-		CCNA_01847	0.83	+0.4
1,979,611	+				+1.1
1,979,618	-		CCNA_01847	0.90	+2.7
1,979,619	-				+2.5
1,979,694	-				-1.8
1,979,731	-		CCNA_01848	0.11	-0.3
1,979,743	-		CCNA_01848	0.14	+0.8
1,979,743	-		CCNA_01848	0.14	-0.3
1,979,745	-		CCNA_01848	0.14	+1.4
1,979,746	-		CCNA_01848	0.15	-0.2
1,979,754	-		CCNA_01848	0.17	+0.9
1,979,789	-		CCNA_01848	0.26	+1.9
1,979,791	-		CCNA_01848	0.26	+1.5
1,979,791	-		CCNA_01848	0.26	+2.8
1,979,837	-		CCNA_01848	0.38	+3.2
1,979,839	-		CCNA_01848	0.38	+2.7
1,979,851	+		CCNA_01848	0.42	+0.8
1,979,853	-		CCNA_01848	0.42	+2.4
1,979,860	-		CCNA_01848	0.44	+1.6
1,979,882	-		CCNA_01848	0.49	+2.1
1,979,914	-		CCNA_01848	0.58	+2.5
1,979,914	-		CCNA_01848	0.58	+2.7
1,979,919	-		CCNA_01848	0.59	+3.0
1,979,948	-		CCNA_01848	0.66	+3.3