Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01678

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,804,127	-		CCNA_01677	0.25	+2.7
1,804,135	+		CCNA_01677	0.26	+4.3
1,804,190	+		CCNA_01677	0.30	+4.3
1,804,191	-		CCNA_01677	0.30	+1.4
1,804,203	-		CCNA_01677	0.31	+1.7
1,804,330	+		CCNA_01677	0.41	+3.1
1,804,331	+		CCNA_01677	0.42	+3.4
1,804,338	-		CCNA_01677	0.42	+0.6
1,804,338	-		CCNA_01677	0.42	+1.2
1,804,400	+		CCNA_01677	0.47	+3.5
1,804,423	+		CCNA_01677	0.49	+3.1
1,804,462	+		CCNA_01677	0.52	+4.9
1,804,511	-		CCNA_01677	0.56	+1.8
1,804,559	+		CCNA_01677	0.60	+4.4
1,804,559	+		CCNA_01677	0.60	+5.0
1,804,559	+		CCNA_01677	0.60	+4.7
1,804,567	-		CCNA_01677	0.60	-0.1
1,804,666	+		CCNA_01677	0.68	+4.6
1,804,726	+		CCNA_01677	0.73	+4.4
1,804,744	-		CCNA_01677	0.75	+2.4
1,804,751	+		CCNA_01677	0.75	+4.4
1,804,751	+		CCNA_01677	0.75	+5.1
1,804,759	-		CCNA_01677	0.76	+2.5
1,804,761	+		CCNA_01677	0.76	+5.7
1,804,769	+		CCNA_01677	0.77	+5.0
1,804,827	+		CCNA_01677	0.81	+5.2
1,804,831	+		CCNA_01677	0.82	+4.0
1,804,887	+		CCNA_01677	0.86	+5.4
1,804,894	+		CCNA_01677	0.87	+5.8
1,804,895	-		CCNA_01677	0.87	-1.1
1,805,007	-				+2.5
1,805,041	+				+4.8
1,805,049	-				-0.8
1,805,131	+				-0.5
1,805,145	+				+1.2
1,805,199	-		CCNA_01678	0.14	+0.1
1,805,234	-		CCNA_01678	0.17	-1.6
1,805,236	-		CCNA_01678	0.18	+0.4
1,805,242	-		CCNA_01678	0.18	+0.9
1,805,266	+		CCNA_01678	0.21	+0.2
1,805,266	+		CCNA_01678	0.21	-0.2
1,805,266	+		CCNA_01678	0.21	+1.6
1,805,266	+		CCNA_01678	0.21	+2.1
1,805,273	-		CCNA_01678	0.21	-1.3
1,805,299	+		CCNA_01678	0.24	+1.5
1,805,357	+		CCNA_01678	0.30	-0.8
1,805,422	-		CCNA_01678	0.36	+1.0
1,805,465	-		CCNA_01678	0.40	-1.6
1,805,499	+		CCNA_01678	0.44	-1.5
1,805,504	+		CCNA_01678	0.44	-1.5
1,805,632	+		CCNA_01678	0.57	+1.9
1,805,645	-		CCNA_01678	0.58	-2.1
1,805,691	+		CCNA_01678	0.63	+1.2
1,805,696	+		CCNA_01678	0.63	+2.8
1,805,718	-		CCNA_01678	0.66	-0.2
1,805,751	+		CCNA_01678	0.69	+0.1
1,805,780	-		CCNA_01678	0.72	-0.2
1,805,799	+		CCNA_01678	0.74	-2.8
1,805,814	+		CCNA_01678	0.75	-2.4
1,805,822	-		CCNA_01678	0.76	-0.7
1,805,830	+		CCNA_01678	0.77	+1.3
1,805,830	+		CCNA_01678	0.77	+0.5
1,805,830	+		CCNA_01678	0.77	-0.0
1,805,830	+		CCNA_01678	0.77	+0.6
1,805,830	+		CCNA_01678	0.77	-0.6
1,805,838	-		CCNA_01678	0.78	-1.0
1,805,957	-		CCNA_01678	0.89	+0.6
1,805,971	+				+2.2
1,806,020	+				+1.8
1,806,032	-				+0.6
1,806,046	-				+0.2
1,806,051	+				+2.0
1,806,065	-				+1.2
1,806,099	+				-2.0
1,806,099	+				+0.8
1,806,099	+				-0.2
1,806,106	+				+1.8
1,806,107	-				+1.4
1,806,111	+				+0.8
1,806,111	+				+1.6
1,806,111	+				+1.7
1,806,111	+				+2.0
1,806,111	+				+1.4
1,806,119	-				-1.7
1,806,119	-				-1.7
1,806,119	-				+0.7
1,806,131	+				+1.9
1,806,146	-				-0.4
1,806,204	+				+0.8
1,806,204	+				+2.0
1,806,204	+				+2.7
1,806,265	-		CCNA_01679	0.14	+0.6
1,806,280	-		CCNA_01679	0.15	-0.1
1,806,344	+		CCNA_01679	0.19	+2.8
1,806,344	+		CCNA_01679	0.19	-0.2
1,806,349	+		CCNA_01679	0.20	+1.1
1,806,352	-		CCNA_01679	0.20	-0.8
1,806,445	-		CCNA_01679	0.26	+0.6
1,806,561	+		CCNA_01679	0.34	+0.3
1,806,563	+		CCNA_01679	0.34	+0.3
1,806,563	+		CCNA_01679	0.34	+1.6
1,806,571	-		CCNA_01679	0.35	+1.5
1,806,612	+		CCNA_01679	0.38	+0.8
1,806,649	+		CCNA_01679	0.40	+1.5
1,806,652	-		CCNA_01679	0.41	+0.9
1,806,705	+		CCNA_01679	0.44	-0.3
1,806,792	-		CCNA_01679	0.50	-1.1
1,807,013	+		CCNA_01679	0.65	-0.3
1,807,054	+		CCNA_01679	0.68	+0.8