Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01250

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,376,396	+		CCNA_01248	0.63	-2.4
1,376,455	+		CCNA_01248	0.73	+2.2
1,376,590	+				+0.8
1,376,593	-				+1.0
1,376,617	+				-1.2
1,376,620	-				+0.3
1,376,623	+				-1.9
1,376,692	+				+3.7
1,376,710	+				+3.3
1,376,725	+		CCNA_01249	0.11	+5.7
1,376,733	-		CCNA_01249	0.12	+1.6
1,376,744	+		CCNA_01249	0.14	+1.1
1,376,751	+		CCNA_01249	0.15	+1.8
1,376,751	+		CCNA_01249	0.15	+3.8
1,376,751	+		CCNA_01249	0.15	+2.6
1,376,752	-		CCNA_01249	0.15	-0.7
1,376,752	-		CCNA_01249	0.15	+3.3
1,376,767	+		CCNA_01249	0.17	+2.3
1,376,788	+		CCNA_01249	0.19	+3.6
1,376,860	-		CCNA_01249	0.28	+1.1
1,376,920	+		CCNA_01249	0.36	+3.2
1,376,935	+		CCNA_01249	0.37	+3.5
1,376,935	+		CCNA_01249	0.37	+0.5
1,376,950	-		CCNA_01249	0.39	+3.3
1,376,995	-		CCNA_01249	0.45	+1.9
1,376,995	-		CCNA_01249	0.45	+1.2
1,377,030	-		CCNA_01249	0.49	+2.3
1,377,070	+		CCNA_01249	0.54	+3.9
1,377,078	-		CCNA_01249	0.55	-1.9
1,377,078	-		CCNA_01249	0.55	-0.4
1,377,078	-		CCNA_01249	0.55	+0.0
1,377,078	-		CCNA_01249	0.55	+2.7
1,377,078	-		CCNA_01249	0.55	+0.5
1,377,078	-		CCNA_01249	0.55	+1.4
1,377,078	-		CCNA_01249	0.55	+2.9
1,377,114	+		CCNA_01249	0.60	+2.6
1,377,114	+		CCNA_01249	0.60	+3.4
1,377,122	-		CCNA_01249	0.61	-0.0
1,377,122	-		CCNA_01249	0.61	-1.0
1,377,174	-				+1.0
1,377,331	-		CCNA_01249	0.86	+3.6
1,377,338	+		CCNA_01249	0.87	+3.8
1,377,346	-		CCNA_01249	0.88	+3.0
1,377,421	+				+2.5
1,377,429	-				+5.0
1,377,429	-				+1.2
1,377,441	+				-0.3
1,377,474	-				+2.9
1,377,495	+		CCNA_01250	0.11	+4.9
1,377,495	+		CCNA_01250	0.11	+3.6
1,377,524	+		CCNA_01250	0.14	+3.5
1,377,543	+		CCNA_01250	0.15	+4.9
1,377,546	-		CCNA_01250	0.16	-0.2
1,377,546	-		CCNA_01250	0.16	+3.4
1,377,560	+		CCNA_01250	0.17	+1.3
1,377,579	+		CCNA_01250	0.19	+3.5
1,377,579	+		CCNA_01250	0.19	+4.2
1,377,579	+		CCNA_01250	0.19	+1.6
1,377,587	-		CCNA_01250	0.20	-0.7
1,377,587	-		CCNA_01250	0.20	+2.4
1,377,587	-		CCNA_01250	0.20	+2.0
1,377,587	-		CCNA_01250	0.20	+2.5
1,377,587	-		CCNA_01250	0.20	-1.0
1,377,590	+		CCNA_01250	0.20	+4.1
1,377,624	-		CCNA_01250	0.23	-1.0
1,377,624	-		CCNA_01250	0.23	-0.2
1,377,624	-		CCNA_01250	0.23	+3.0
1,377,624	-		CCNA_01250	0.23	+3.9
1,377,642	+		CCNA_01250	0.25	+1.0
1,377,660	+		CCNA_01250	0.27	+2.2
1,377,749	+		CCNA_01250	0.35	+2.5
1,377,757	+		CCNA_01250	0.36	+6.2
1,377,765	-		CCNA_01250	0.37	+1.1
1,377,792	-		CCNA_01250	0.39	-0.0
1,377,866	-		CCNA_01250	0.46	+0.1
1,377,894	+		CCNA_01250	0.49	+4.3
1,377,895	+				+4.0
1,377,895	+		CCNA_01250	0.49	+3.6
1,377,910	+		CCNA_01250	0.51	+3.8
1,377,912	+		CCNA_01250	0.51	+4.6
1,377,943	+		CCNA_01250	0.54	+4.1
1,377,954	+		CCNA_01250	0.55	+4.4
1,378,052	+		CCNA_01250	0.64	+4.0
1,378,057	+		CCNA_01250	0.65	+2.5
1,378,067	+		CCNA_01250	0.66	+3.8
1,378,067	+		CCNA_01250	0.66	+3.8
1,378,095	+		CCNA_01250	0.68	+3.5
1,378,125	+		CCNA_01250	0.71	+2.7
1,378,147	+		CCNA_01250	0.73	+1.2
1,378,158	-		CCNA_01250	0.75	-2.3
1,378,230	+		CCNA_01250	0.81	+4.4
1,378,230	+		CCNA_01250	0.81	-0.9
1,378,230	+		CCNA_01250	0.81	+3.4
1,378,230	+		CCNA_01250	0.81	+5.1
1,378,230	+		CCNA_01250	0.81	+3.6
1,378,267	+		CCNA_01250	0.85	+1.0
1,378,325	-				-0.3
1,378,334	+				+2.5
1,378,342	-				+1.5
1,378,370	-				+0.7
1,378,384	+				+3.4
1,378,463	+				+4.1
1,378,463	+				+3.3
1,378,541	+		CCNA_01251	0.16	+3.2
1,378,550	-		CCNA_01251	0.17	+3.9
1,378,550	-		CCNA_01251	0.17	+0.1
1,378,551	+		CCNA_01251	0.17	+4.6
1,378,555	-		CCNA_01251	0.18	+2.5
1,378,566	+		CCNA_01251	0.19	+3.6
1,378,616	+		CCNA_01251	0.26	+2.2
1,378,646	-		CCNA_01251	0.30	+1.9
1,378,666	-		CCNA_01251	0.33	-0.4
1,378,723	+		CCNA_01251	0.40	+3.6
1,378,756	-		CCNA_01251	0.44	+3.9
1,378,761	+		CCNA_01251	0.45	+0.3
1,378,812	+		CCNA_01251	0.52	+3.6
1,378,812	+		CCNA_01251	0.52	+2.1
1,378,812	+		CCNA_01251	0.52	+0.1
1,378,820	-		CCNA_01251	0.53	+0.5
1,378,838	+		CCNA_01251	0.55	+3.3
1,378,936	+		CCNA_01251	0.68	+3.0
1,378,957	-		CCNA_01251	0.71	+3.3
1,378,959	+		CCNA_01251	0.71	+5.3
1,378,967	-				+5.1
1,379,035	-		CCNA_01251	0.81	+1.0
1,379,038	+		CCNA_01251	0.82	+5.1
1,379,122	+				+5.3
1,379,159	-				+4.1
1,379,179	+				-3.5
1,379,212	-				+0.5
1,379,237	-				-0.9
1,379,244	+				-0.1
1,379,270	+				-0.3
1,379,296	+				+0.5
1,379,296	+				-0.3
1,379,303	+				+1.1
1,379,304	-				-1.5
1,379,304	-				-1.6
1,379,304	-				-2.2
1,379,316	-				-2.0
1,379,337	-				-1.5
1,379,370	+				+0.1
1,379,378	+				-1.6
1,379,407	-		CCNA_01252	0.11	-1.4