Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01011

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,090,064	-		CCNA_01010	0.35	+0.2
1,090,086	-		CCNA_01010	0.37	-1.1
1,090,088	+		CCNA_01010	0.37	+0.2
1,090,113	-		CCNA_01010	0.38	-4.0
1,090,127	+		CCNA_01010	0.39	-1.9
1,090,174	-		CCNA_01010	0.42	+0.2
1,090,179	-		CCNA_01010	0.43	-1.8
1,090,184	+		CCNA_01010	0.43	-2.2
1,090,219	-		CCNA_01010	0.45	-0.1
1,090,219	-		CCNA_01010	0.45	-2.7
1,090,237	-		CCNA_01010	0.46	-1.0
1,090,238	+		CCNA_01010	0.46	-0.2
1,090,238	+		CCNA_01010	0.46	-0.6
1,090,246	-		CCNA_01010	0.47	-0.2
1,090,268	+		CCNA_01010	0.48	-2.6
1,090,270	+		CCNA_01010	0.48	+1.2
1,090,276	-		CCNA_01010	0.49	-0.7
1,090,326	+		CCNA_01010	0.52	-2.3
1,090,326	+		CCNA_01010	0.52	+1.9
1,090,326	+		CCNA_01010	0.52	-1.5
1,090,326	+		CCNA_01010	0.52	+0.1
1,090,326	+		CCNA_01010	0.52	-2.0
1,090,334	-		CCNA_01010	0.53	+0.8
1,090,334	-		CCNA_01010	0.53	-1.5
1,090,334	-		CCNA_01010	0.53	-0.4
1,090,336	-		CCNA_01010	0.53	-1.0
1,090,336	-		CCNA_01010	0.53	-0.1
1,090,341	+		CCNA_01010	0.53	-0.4
1,090,362	-		CCNA_01010	0.54	-3.7
1,090,383	-		CCNA_01010	0.56	-1.0
1,090,388	+		CCNA_01010	0.56	+0.2
1,090,391	-		CCNA_01010	0.56	+2.5
1,090,396	-		CCNA_01010	0.57	+0.3
1,090,401	-		CCNA_01010	0.57	-3.0
1,090,416	-		CCNA_01010	0.58	-1.2
1,090,421	+		CCNA_01010	0.58	+0.1
1,090,421	+		CCNA_01010	0.58	-0.8
1,090,426	+		CCNA_01010	0.59	-0.5
1,090,429	-		CCNA_01010	0.59	-1.6
1,090,429	-		CCNA_01010	0.59	-1.0
1,090,429	-		CCNA_01010	0.59	-0.2
1,090,488	+		CCNA_01010	0.63	-0.5
1,090,496	-		CCNA_01010	0.63	-1.4
1,090,496	-		CCNA_01010	0.63	-1.6
1,090,508	-		CCNA_01010	0.64	-1.7
1,090,510	+		CCNA_01010	0.64	-1.9
1,090,510	+		CCNA_01010	0.64	-0.8
1,090,518	-		CCNA_01010	0.65	-1.0
1,090,518	-		CCNA_01010	0.65	-0.5
1,090,534	-		CCNA_01010	0.66	-0.2
1,090,646	-		CCNA_01010	0.73	-0.5
1,090,646	-		CCNA_01010	0.73	+1.9
1,090,667	+		CCNA_01010	0.74	+0.1
1,090,675	-		CCNA_01010	0.75	-4.0
1,090,675	-		CCNA_01010	0.75	-0.3
1,090,700	+		CCNA_01010	0.76	+0.6
1,090,700	-		CCNA_01010	0.76	+1.1
1,090,708	-		CCNA_01010	0.77	-1.4
1,090,723	+		CCNA_01010	0.78	-1.6
1,090,734	+		CCNA_01010	0.79	+0.8
1,090,743	+		CCNA_01010	0.79	-1.8
1,090,746	-		CCNA_01010	0.79	-2.1
1,090,755	+		CCNA_01010	0.80	-1.0
1,090,759	-		CCNA_01010	0.80	-0.1
1,090,760	+		CCNA_01010	0.80	-0.7
1,090,778	+		CCNA_01010	0.81	+0.2
1,090,786	-		CCNA_01010	0.82	+1.0
1,090,786	-		CCNA_01010	0.82	+2.4
1,090,786	-		CCNA_01010	0.82	-0.4
1,090,786	-		CCNA_01010	0.82	-0.1
1,090,817	+		CCNA_01010	0.84	-0.3
1,090,817	+		CCNA_01010	0.84	-0.9
1,090,825	-		CCNA_01010	0.84	-2.6
1,090,832	+		CCNA_01010	0.85	-1.6
1,090,832	+		CCNA_01010	0.85	-0.4
1,090,834	+		CCNA_01010	0.85	-1.5
1,090,840	-		CCNA_01010	0.85	-1.3
1,090,840	-		CCNA_01010	0.85	-0.1
1,090,842	-		CCNA_01010	0.86	-1.6
1,090,907	+		CCNA_01010	0.90	+1.3
1,090,907	+		CCNA_01010	0.90	-1.5
1,090,907	+		CCNA_01010	0.90	+0.1
1,090,909	-		CCNA_01010	0.90	-3.4
1,090,915	-				-1.5
1,090,915	-				-1.9
1,090,929	-				-1.7
1,090,958	-				+0.9
1,091,009	-				-1.6
1,091,009	-				-3.0
1,091,012	+				+0.3
1,091,037	+				+0.1
1,091,040	-				+0.5
1,091,040	-				+0.2
1,091,056	-				-0.5
1,091,059	+				-2.4
1,091,067	-				+0.9
1,091,069	-				+1.6
1,091,090	-				-1.4
1,091,090	-				-1.3
1,091,105	+				+0.7
1,091,291	-		CCNA_01011	0.20	+1.2
1,091,291	-		CCNA_01011	0.20	+0.6
1,091,490	-		CCNA_01011	0.37	+1.4
1,091,504	-		CCNA_01011	0.38	-0.2
1,091,514	-		CCNA_01011	0.39	+1.9
1,091,559	+		CCNA_01011	0.42	-0.4
1,091,561	-		CCNA_01011	0.42	+0.4
1,091,587	-		CCNA_01011	0.45	-1.2
1,091,604	-		CCNA_01011	0.46	+1.1
1,091,640	-		CCNA_01011	0.49	-0.4
1,091,679	+		CCNA_01011	0.52	+1.6
1,091,689	+		CCNA_01011	0.53	+1.2
1,091,697	-		CCNA_01011	0.54	-2.9
1,091,784	-		CCNA_01011	0.61	+0.7
1,091,825	+		CCNA_01011	0.64	+0.9
1,091,841	+		CCNA_01011	0.66	-0.4
1,091,865	+		CCNA_01011	0.68	+0.3
1,091,868	-		CCNA_01011	0.68	+0.8
1,091,886	+		CCNA_01011	0.69	-1.0
1,091,896	+		CCNA_01011	0.70	-1.5
1,091,904	-		CCNA_01011	0.71	-2.8
1,091,906	+		CCNA_01011	0.71	+0.6
1,091,911	+		CCNA_01011	0.71	-0.1
1,091,911	+		CCNA_01011	0.71	-0.2
1,091,914	-		CCNA_01011	0.72	-0.8
1,091,917	-		CCNA_01011	0.72	+1.0
1,091,919	-		CCNA_01011	0.72	+2.0
1,091,919	-		CCNA_01011	0.72	+0.4
1,091,945	+		CCNA_01011	0.74	+0.4
1,092,009	+		CCNA_01011	0.80	+1.8
1,092,059	+		CCNA_01011	0.84	+0.5
1,092,059	+		CCNA_01011	0.84	-1.8
1,092,059	+		CCNA_01011	0.84	-0.8
1,092,067	-		CCNA_01011	0.84	-0.1
1,092,103	+		CCNA_01011	0.87	-1.0
1,092,113	-		CCNA_01011	0.88	+1.3
1,092,119	-		CCNA_01011	0.89	+0.7
1,092,186	+				-2.6
1,092,191	+				-0.7
1,092,193	-				-1.8
1,092,194	-				-0.8
1,092,199	-				+0.8
1,092,206	+				-1.1
1,092,206	+				-0.4
1,092,259	-				+0.3
1,092,269	-				+0.4
1,092,276	+				-0.7
1,092,323	+				-1.8
1,092,329	+				-0.6
1,092,329	+				-2.4
1,092,337	-				-0.4
1,092,337	-				+1.5
1,092,409	+				+0.7
1,092,601	-		CCNA_01012	0.19	+0.9
1,092,651	+		CCNA_01012	0.23	+0.9
1,092,734	+		CCNA_01012	0.29	+0.4
1,092,808	+		CCNA_01012	0.34	+2.8
1,092,813	+		CCNA_01012	0.34	+1.4
1,093,211	+		CCNA_01012	0.63	-0.3