Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00931

Experiment: PYE with Nalidixic 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nalidixic 0.06 mg/ml
1,005,873	+		CCNA_00929	0.63	-2.5
1,005,898	+		CCNA_00929	0.65	-1.7
1,005,898	+		CCNA_00929	0.65	+0.5
1,005,906	-		CCNA_00929	0.66	+1.1
1,005,917	+		CCNA_00929	0.67	-0.2
1,005,930	+		CCNA_00929	0.69	+1.7
1,005,971	+		CCNA_00929	0.73	+0.4
1,006,054	+		CCNA_00929	0.81	+1.3
1,006,056	+		CCNA_00929	0.81	+0.7
1,006,056	+		CCNA_00929	0.81	+0.9
1,006,056	+		CCNA_00929	0.81	+0.0
1,006,056	+		CCNA_00929	0.81	+0.8
1,006,056	+		CCNA_00929	0.81	+0.3
1,006,062	+		CCNA_00929	0.82	+0.4
1,006,062	-		CCNA_00929	0.82	-1.5
1,006,064	-		CCNA_00929	0.82	-2.3
1,006,064	-		CCNA_00929	0.82	+0.3
1,006,064	-		CCNA_00929	0.82	+0.2
1,006,100	+		CCNA_00929	0.86	-0.4
1,006,100	-		CCNA_00929	0.86	-0.4
1,006,109	+		CCNA_00929	0.87	+0.7
1,006,123	+		CCNA_00929	0.88	+0.5
1,006,123	+		CCNA_00929	0.88	-2.1
1,006,147	+				-0.1
1,006,147	+				+0.3
1,006,155	-				-0.6
1,006,163	-				+0.3
1,006,168	-				-0.7
1,006,168	-				-0.6
1,006,183	+				+0.4
1,006,231	+				+1.4
1,006,236	+				-4.0
1,006,236	+				+1.3
1,006,236	+				-1.6
1,006,236	+				+1.1
1,006,236	+				+0.0
1,006,236	+				+0.6
1,006,244	-				-1.7
1,006,244	-				-1.9
1,006,244	-				-1.6
1,006,244	-				+0.1
1,006,244	-				+0.6
1,006,276	+				-0.2
1,006,284	-				-1.5
1,006,285	+				+1.1
1,006,299	+				-2.1
1,006,299	+				-1.8
1,006,310	+				-2.2
1,006,322	+		CCNA_00930	0.11	+0.6
1,006,328	+		CCNA_00930	0.12	+0.4
1,006,328	+		CCNA_00930	0.12	+0.8
1,006,350	+		CCNA_00930	0.16	+0.2
1,006,350	+		CCNA_00930	0.16	-0.7
1,006,358	-		CCNA_00930	0.17	-0.0
1,006,360	+		CCNA_00930	0.17	-0.0
1,006,360	+		CCNA_00930	0.17	+1.7
1,006,368	-		CCNA_00930	0.19	-1.3
1,006,397	-		CCNA_00930	0.23	-0.3
1,006,404	+		CCNA_00930	0.24	+2.9
1,006,404	+		CCNA_00930	0.24	-0.1
1,006,404	+		CCNA_00930	0.24	+0.3
1,006,404	+		CCNA_00930	0.24	+1.5
1,006,412	-		CCNA_00930	0.26	-0.6
1,006,443	-		CCNA_00930	0.31	-1.2
1,006,447	+		CCNA_00930	0.31	+1.4
1,006,448	+		CCNA_00930	0.32	+0.9
1,006,448	+		CCNA_00930	0.32	-0.4
1,006,449	+		CCNA_00930	0.32	-1.2
1,006,456	-		CCNA_00930	0.33	-1.4
1,006,461	-		CCNA_00930	0.34	-0.2
1,006,463	+		CCNA_00930	0.34	+1.9
1,006,463	+		CCNA_00930	0.34	+1.0
1,006,463	+		CCNA_00930	0.34	-0.0
1,006,496	+		CCNA_00930	0.39	+0.8
1,006,515	-		CCNA_00930	0.42	-1.5
1,006,516	-		CCNA_00930	0.43	-2.0
1,006,528	+		CCNA_00930	0.44	+0.5
1,006,543	+		CCNA_00930	0.47	+1.0
1,006,543	+		CCNA_00930	0.47	+1.1
1,006,543	+		CCNA_00930	0.47	+1.7
1,006,544	+		CCNA_00930	0.47	+1.6
1,006,546	-		CCNA_00930	0.47	-0.2
1,006,551	-		CCNA_00930	0.48	-1.7
1,006,563	+		CCNA_00930	0.50	+0.7
1,006,614	+		CCNA_00930	0.58	+1.1
1,006,642	+		CCNA_00930	0.63	-0.6
1,006,657	+		CCNA_00930	0.65	+1.2
1,006,657	+		CCNA_00930	0.65	+1.5
1,006,677	+		CCNA_00930	0.69	-1.2
1,006,677	+		CCNA_00930	0.69	-1.1
1,006,685	-		CCNA_00930	0.70	+2.5
1,006,688	+		CCNA_00930	0.70	-0.5
1,006,731	+		CCNA_00930	0.77	+1.3
1,006,745	-		CCNA_00930	0.80	+0.3
1,006,751	+		CCNA_00930	0.81	+0.8
1,006,756	+		CCNA_00930	0.81	-1.6
1,006,756	+		CCNA_00930	0.81	+0.8
1,006,758	+		CCNA_00930	0.82	+0.7
1,006,764	-		CCNA_00930	0.83	+2.8
1,006,766	-		CCNA_00930	0.83	-1.5
1,006,767	+		CCNA_00930	0.83	+1.5
1,006,801	+		CCNA_00930	0.89	-1.8
1,006,801	+		CCNA_00930	0.89	+1.5
1,006,808	+		CCNA_00930	0.90	-0.1
1,006,864	+				+0.7
1,006,872	-				-1.7
1,006,907	+				+1.2
1,006,938	+				+2.8
1,006,946	-				+1.3
1,006,962	+				+1.2
1,007,017	-		CCNA_00931	0.14	-1.6
1,007,140	+		CCNA_00931	0.24	+1.7
1,007,151	+		CCNA_00931	0.25	+0.3
1,007,157	+		CCNA_00931	0.26	+1.0
1,007,192	+		CCNA_00931	0.29	+1.1
1,007,219	+		CCNA_00931	0.31	+0.8
1,007,225	-		CCNA_00931	0.32	+0.7
1,007,246	-		CCNA_00931	0.33	-1.3
1,007,248	+		CCNA_00931	0.33	+2.7
1,007,248	+		CCNA_00931	0.33	+1.6
1,007,269	+		CCNA_00931	0.35	+1.6
1,007,289	+		CCNA_00931	0.37	-2.0
1,007,295	+		CCNA_00931	0.37	+1.3
1,007,303	+		CCNA_00931	0.38	+1.7
1,007,368	+		CCNA_00931	0.43	+2.0
1,007,369	+		CCNA_00931	0.43	+1.2
1,007,376	-		CCNA_00931	0.44	-0.0
1,007,378	-		CCNA_00931	0.44	-0.4
1,007,379	+		CCNA_00931	0.44	+1.4
1,007,429	-		CCNA_00931	0.48	-1.8
1,007,502	+		CCNA_00931	0.55	+0.7
1,007,556	-		CCNA_00931	0.59	-0.6
1,007,569	+		CCNA_00931	0.60	+0.6
1,007,574	+		CCNA_00931	0.61	-1.5
1,007,584	+		CCNA_00931	0.61	+0.1
1,007,603	+		CCNA_00931	0.63	-3.5
1,007,651	+		CCNA_00931	0.67	-2.3
1,007,677	-		CCNA_00931	0.69	-1.8
1,007,682	-		CCNA_00931	0.69	-1.6
1,007,701	+		CCNA_00931	0.71	+0.5
1,007,706	+		CCNA_00931	0.71	-2.2
1,007,720	+		CCNA_00931	0.73	-0.3
1,007,748	-		CCNA_00931	0.75	-0.5
1,007,782	+		CCNA_00931	0.78	+1.8
1,007,790	-		CCNA_00931	0.78	-1.0
1,007,799	+		CCNA_00931	0.79	+1.4
1,007,804	+		CCNA_00931	0.80	+0.1
1,007,809	+		CCNA_00931	0.80	-1.2
1,007,817	-		CCNA_00931	0.81	-2.2
1,007,821	+		CCNA_00931	0.81	-0.6
1,007,883	+		CCNA_00931	0.86	-1.2
1,007,907	+		CCNA_00931	0.88	-1.5
1,007,920	+		CCNA_00931	0.89	-2.7
1,007,954	+				-0.6
1,007,973	+				-0.9
1,008,022	+				-2.9
1,008,052	-				-0.9
1,008,052	-				+1.2
1,008,071	+				-0.8
1,008,113	+		CCNA_00932	0.11	-0.3
1,008,121	-		CCNA_00932	0.12	-2.0
1,008,133	+		CCNA_00932	0.15	-0.3
1,008,143	-				+0.3
1,008,153	-		CCNA_00932	0.19	+0.5
1,008,176	-		CCNA_00932	0.24	-1.2
1,008,204	+		CCNA_00932	0.30	+0.9
1,008,211	+		CCNA_00932	0.32	+1.1
1,008,212	+		CCNA_00932	0.32	-2.3
1,008,220	-		CCNA_00932	0.34	-1.5
1,008,233	+		CCNA_00932	0.37	+1.4
1,008,237	+		CCNA_00932	0.37	+0.3
1,008,238	+		CCNA_00932	0.38	+2.6
1,008,247	-		CCNA_00932	0.40	+2.5
1,008,265	+		CCNA_00932	0.44	+0.5
1,008,274	+		CCNA_00932	0.45	+1.5
1,008,282	-		CCNA_00932	0.47	-1.4
1,008,282	-		CCNA_00932	0.47	+1.5
1,008,282	-		CCNA_00932	0.47	-0.5
1,008,302	-		CCNA_00932	0.52	+2.8
1,008,309	+		CCNA_00932	0.53	+3.1
1,008,323	+		CCNA_00932	0.56	+1.6
1,008,335	+		CCNA_00932	0.59	-0.7
1,008,335	+		CCNA_00932	0.59	-0.8
1,008,335	+		CCNA_00932	0.59	+0.7
1,008,343	-		CCNA_00932	0.60	-1.1
1,008,343	-		CCNA_00932	0.60	+0.5
1,008,343	-		CCNA_00932	0.60	-0.6
1,008,383	+		CCNA_00932	0.69	+1.3
1,008,414	+		CCNA_00932	0.76	+1.7
1,008,468	+		CCNA_00932	0.87	+0.9
1,008,484	+				+0.8
1,008,484	+				+2.5
1,008,484	+				+1.4
1,008,491	-				+0.5
1,008,492	-				-0.9
1,008,492	-				-1.6
1,008,492	-				-1.1
1,008,514	+				+1.0
1,008,519	+				-0.2
1,008,519	+				-1.0
1,008,522	-				-1.1
1,008,585	+				-1.1
1,008,602	+				+2.4
1,008,610	+				+2.0
1,008,624	+				-1.7
1,008,626	+				-1.0
1,008,666	+				+1.1
1,008,691	+				-0.3
1,008,723	-				-0.6
1,008,752	+				+1.1
1,008,768	-		CCNA_00933	0.11	-0.6
1,008,768	-		CCNA_00933	0.11	+0.9
1,008,784	+		CCNA_00933	0.12	-0.0
1,008,803	+		CCNA_00933	0.13	+1.5
1,008,847	-		CCNA_00933	0.16	+0.9
1,008,850	+		CCNA_00933	0.17	-0.2
1,008,894	-		CCNA_00933	0.20	-0.7
1,008,912	+		CCNA_00933	0.21	+2.8
1,009,003	+		CCNA_00933	0.28	+0.7