Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00899 and CCNA_00900 are separated by 198 nucleotides CCNA_00900 and CCNA_00901 are separated by 269 nucleotides
CCNA_00899: CCNA_00899 - bacterial peptide chain Release factor 1 (RF-1), at 977,024 to 978,094
_00899
CCNA_00900: CCNA_00900 - CHASE4-family GGDEF/EAL protein, at 978,293 to 980,500
_00900
CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606
_00901
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.220 kb on + strand at 978.220 kb on + strand at 978.220 kb on + strand at 978.220 kb on + strand at 978.228 kb on - strand at 978.228 kb on - strand at 978.230 kb on + strand at 978.233 kb on - strand at 978.237 kb on + strand at 978.245 kb on - strand at 978.245 kb on - strand at 978.247 kb on + strand at 978.274 kb on + strand at 978.282 kb on - strand at 978.298 kb on - strand at 978.300 kb on + strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.300 kb on - strand at 978.343 kb on + strand at 978.376 kb on - strand at 978.381 kb on - strand at 978.381 kb on - strand at 978.390 kb on - strand at 978.412 kb on - strand at 978.412 kb on - strand at 978.436 kb on + strand at 978.444 kb on - strand at 978.445 kb on + strand at 978.542 kb on + strand at 978.555 kb on + strand, within CCNA_00900 at 978.563 kb on + strand, within CCNA_00900 at 978.620 kb on - strand, within CCNA_00900 at 978.630 kb on - strand, within CCNA_00900 at 978.665 kb on - strand, within CCNA_00900 at 978.706 kb on - strand, within CCNA_00900 at 978.735 kb on + strand, within CCNA_00900 at 978.748 kb on + strand, within CCNA_00900 at 978.776 kb on + strand, within CCNA_00900 at 978.781 kb on + strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.789 kb on - strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.811 kb on + strand, within CCNA_00900 at 978.819 kb on - strand, within CCNA_00900 at 978.819 kb on - strand, within CCNA_00900 at 978.866 kb on + strand, within CCNA_00900 at 978.886 kb on + strand, within CCNA_00900 at 978.887 kb on - strand, within CCNA_00900 at 978.926 kb on - strand, within CCNA_00900 at 978.957 kb on - strand, within CCNA_00900 at 978.959 kb on + strand, within CCNA_00900 at 978.967 kb on + strand, within CCNA_00900 at 978.967 kb on - strand, within CCNA_00900 at 978.975 kb on - strand, within CCNA_00900 at 978.990 kb on - strand, within CCNA_00900 at 978.999 kb on + strand, within CCNA_00900 at 978.999 kb on + strand, within CCNA_00900 at 979.033 kb on - strand, within CCNA_00900 at 979.033 kb on - strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.040 kb on + strand, within CCNA_00900 at 979.045 kb on + strand, within CCNA_00900 at 979.048 kb on - strand, within CCNA_00900 at 979.053 kb on - strand, within CCNA_00900 at 979.062 kb on + strand, within CCNA_00900 at 979.081 kb on + strand, within CCNA_00900 at 979.081 kb on + strand, within CCNA_00900 at 979.095 kb on - strand, within CCNA_00900 at 979.104 kb on + strand, within CCNA_00900 at 979.172 kb on + strand, within CCNA_00900 at 979.182 kb on + strand, within CCNA_00900 at 979.185 kb on - strand, within CCNA_00900 at 979.201 kb on + strand, within CCNA_00900 at 979.201 kb on + strand, within CCNA_00900 at 979.209 kb on - strand, within CCNA_00900 at 979.209 kb on - strand, within CCNA_00900 at 979.216 kb on - strand, within CCNA_00900 at 979.216 kb on - strand, within CCNA_00900 at 979.220 kb on + strand, within CCNA_00900 at 979.220 kb on + strand, within CCNA_00900 at 979.220 kb on - strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.234 kb on + strand, within CCNA_00900 at 979.310 kb on + strand, within CCNA_00900 at 979.322 kb on + strand at 979.330 kb on - strand at 979.330 kb on - strand, within CCNA_00900 at 979.332 kb on + strand, within CCNA_00900 at 979.332 kb on + strand, within CCNA_00900 at 979.333 kb on + strand, within CCNA_00900 at 979.340 kb on - strand, within CCNA_00900 at 979.341 kb on - strand, within CCNA_00900 at 979.350 kb on - strand, within CCNA_00900 at 979.512 kb on - strand, within CCNA_00900 at 979.516 kb on + strand, within CCNA_00900 at 979.541 kb on + strand, within CCNA_00900 at 979.581 kb on + strand, within CCNA_00900 at 979.621 kb on + strand, within CCNA_00900 at 979.621 kb on + strand, within CCNA_00900 at 979.649 kb on + strand, within CCNA_00900 at 979.649 kb on + strand, within CCNA_00900 at 979.660 kb on + strand, within CCNA_00900 at 979.667 kb on + strand, within CCNA_00900 at 979.700 kb on + strand, within CCNA_00900 at 979.715 kb on + strand, within CCNA_00900 at 979.782 kb on - strand, within CCNA_00900 at 979.798 kb on + strand, within CCNA_00900 at 979.825 kb on - strand, within CCNA_00900 at 979.825 kb on - strand, within CCNA_00900 at 979.832 kb on + strand, within CCNA_00900 at 979.878 kb on + strand, within CCNA_00900 at 979.895 kb on + strand, within CCNA_00900 at 979.902 kb on + strand, within CCNA_00900 at 979.903 kb on - strand, within CCNA_00900 at 979.922 kb on - strand, within CCNA_00900 at 979.973 kb on + strand, within CCNA_00900 at 979.974 kb on + strand, within CCNA_00900 at 979.981 kb on - strand, within CCNA_00900 at 979.981 kb on - strand, within CCNA_00900 at 979.993 kb on + strand, within CCNA_00900 at 980.000 kb on + strand, within CCNA_00900 at 980.048 kb on - strand, within CCNA_00900 at 980.154 kb on + strand at 980.192 kb on + strand, within CCNA_00900 at 980.192 kb on + strand, within CCNA_00900 at 980.192 kb on + strand, within CCNA_00900 at 980.236 kb on + strand, within CCNA_00900 at 980.236 kb on + strand, within CCNA_00900 at 980.244 kb on - strand, within CCNA_00900 at 980.278 kb on + strand, within CCNA_00900 at 980.282 kb on - strand at 980.282 kb on - strand at 980.284 kb on + strand at 980.324 kb on + strand at 980.332 kb on - strand at 980.338 kb on + strand at 980.361 kb on + strand at 980.402 kb on - strand at 980.405 kb on + strand at 980.494 kb on + strand at 980.502 kb on - strand at 980.502 kb on - strand at 980.538 kb on + strand at 980.546 kb on - strand at 980.577 kb on - strand at 980.590 kb on + strand at 980.608 kb on + strand at 980.632 kb on - strand at 980.820 kb on - strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.822 kb on + strand at 980.847 kb on - strand at 980.869 kb on + strand, within CCNA_00901 at 980.874 kb on + strand, within CCNA_00901 at 980.883 kb on - strand, within CCNA_00901 at 980.925 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.971 kb on + strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 980.979 kb on - strand, within CCNA_00901 at 981.018 kb on + strand, within CCNA_00901 at 981.024 kb on + strand, within CCNA_00901 at 981.048 kb on + strand, within CCNA_00901 at 981.056 kb on - strand, within CCNA_00901 at 981.093 kb on - strand, within CCNA_00901 at 981.102 kb on + strand, within CCNA_00901 at 981.118 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.128 kb on + strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.136 kb on - strand, within CCNA_00901 at 981.154 kb on + strand, within CCNA_00901 at 981.155 kb on + strand, within CCNA_00901 at 981.163 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.200 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.223 kb on - strand, within CCNA_00901 at 981.228 kb on - strand, within CCNA_00901 at 981.317 kb on + strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.325 kb on - strand, within CCNA_00901 at 981.382 kb on - strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.386 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.401 kb on + strand, within CCNA_00901 at 981.404 kb on - strand, within CCNA_00901 at 981.406 kb on + strand, within CCNA_00901 at 981.407 kb on - strand, within CCNA_00901 at 981.409 kb on - strand, within CCNA_00901 at 981.457 kb on - strand, within CCNA_00901 at 981.488 kb on - strand, within CCNA_00901 at 981.495 kb on + strand, within CCNA_00901
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 978,220 + +0.3 978,220 + -0.0 978,220 + -1.3 978,220 + -0.6 978,228 - +2.3 978,228 - -2.0 978,230 + +1.8 978,233 - -0.0 978,237 + +0.2 978,245 - -1.5 978,245 - +0.7 978,247 + -0.4 978,274 + -0.7 978,282 - -1.3 978,298 - -0.4 978,300 + -2.0 978,300 - -0.0 978,300 - +0.3 978,300 - +1.5 978,300 - +1.1 978,300 - +0.7 978,343 + +0.5 978,376 - +0.7 978,381 - +0.4 978,381 - -0.0 978,390 - +0.9 978,412 - -0.2 978,412 - -0.2 978,436 + -0.2 978,444 - -1.6 978,445 + +1.7 978,542 + +0.7 978,555 + CCNA_00900 0.12 -0.5 978,563 + CCNA_00900 0.12 +0.2 978,620 - CCNA_00900 0.15 +0.7 978,630 - CCNA_00900 0.15 -0.3 978,665 - CCNA_00900 0.17 -0.7 978,706 - CCNA_00900 0.19 -1.6 978,735 + CCNA_00900 0.20 +1.0 978,748 + CCNA_00900 0.21 -0.5 978,776 + CCNA_00900 0.22 -2.4 978,781 + CCNA_00900 0.22 -0.6 978,789 - CCNA_00900 0.22 +0.5 978,789 - CCNA_00900 0.22 +0.6 978,789 - CCNA_00900 0.22 -0.1 978,811 + CCNA_00900 0.23 -0.6 978,811 + CCNA_00900 0.23 -2.2 978,811 + CCNA_00900 0.23 -1.3 978,819 - CCNA_00900 0.24 -3.4 978,819 - CCNA_00900 0.24 +0.7 978,866 + CCNA_00900 0.26 -0.6 978,886 + CCNA_00900 0.27 -2.1 978,887 - CCNA_00900 0.27 -1.3 978,926 - CCNA_00900 0.29 +0.3 978,957 - CCNA_00900 0.30 -0.8 978,959 + CCNA_00900 0.30 +0.5 978,967 + CCNA_00900 0.31 +0.4 978,967 - CCNA_00900 0.31 -1.6 978,975 - CCNA_00900 0.31 +2.1 978,990 - CCNA_00900 0.32 -0.0 978,999 + CCNA_00900 0.32 -1.2 978,999 + CCNA_00900 0.32 -2.5 979,033 - CCNA_00900 0.34 -3.4 979,033 - CCNA_00900 0.34 -0.9 979,040 + CCNA_00900 0.34 -0.9 979,040 + CCNA_00900 0.34 +0.4 979,040 + CCNA_00900 0.34 -1.3 979,045 + CCNA_00900 0.34 -1.5 979,048 - CCNA_00900 0.34 +0.9 979,053 - CCNA_00900 0.34 +0.9 979,062 + CCNA_00900 0.35 +1.7 979,081 + CCNA_00900 0.36 -1.1 979,081 + CCNA_00900 0.36 -3.1 979,095 - CCNA_00900 0.36 -0.0 979,104 + CCNA_00900 0.37 +0.4 979,172 + CCNA_00900 0.40 -0.5 979,182 + CCNA_00900 0.40 -3.2 979,185 - CCNA_00900 0.40 +0.7 979,201 + CCNA_00900 0.41 -2.0 979,201 + CCNA_00900 0.41 +0.1 979,209 - CCNA_00900 0.41 -1.1 979,209 - CCNA_00900 0.41 -0.7 979,216 - CCNA_00900 0.42 -0.3 979,216 - CCNA_00900 0.42 -0.2 979,220 + CCNA_00900 0.42 +0.1 979,220 + CCNA_00900 0.42 +0.1 979,220 - CCNA_00900 0.42 -1.3 979,234 + CCNA_00900 0.43 +1.0 979,234 + CCNA_00900 0.43 -1.4 979,234 + CCNA_00900 0.43 +0.8 979,234 + CCNA_00900 0.43 +1.5 979,310 + CCNA_00900 0.46 +1.0 979,322 + +0.7 979,330 - +2.9 979,330 - CCNA_00900 0.47 -1.4 979,332 + CCNA_00900 0.47 -1.5 979,332 + CCNA_00900 0.47 -1.3 979,333 + CCNA_00900 0.47 -1.3 979,340 - CCNA_00900 0.47 +1.0 979,341 - CCNA_00900 0.47 -1.0 979,350 - CCNA_00900 0.48 +0.9 979,512 - CCNA_00900 0.55 +0.1 979,516 + CCNA_00900 0.55 -1.2 979,541 + CCNA_00900 0.57 -0.2 979,581 + CCNA_00900 0.58 +1.7 979,621 + CCNA_00900 0.60 +0.7 979,621 + CCNA_00900 0.60 -0.6 979,649 + CCNA_00900 0.61 +0.5 979,649 + CCNA_00900 0.61 +2.1 979,660 + CCNA_00900 0.62 -1.8 979,667 + CCNA_00900 0.62 -1.0 979,700 + CCNA_00900 0.64 -1.1 979,715 + CCNA_00900 0.64 +0.6 979,782 - CCNA_00900 0.67 +1.8 979,798 + CCNA_00900 0.68 +1.3 979,825 - CCNA_00900 0.69 +0.8 979,825 - CCNA_00900 0.69 -0.8 979,832 + CCNA_00900 0.70 +1.0 979,878 + CCNA_00900 0.72 +0.7 979,895 + CCNA_00900 0.73 -1.3 979,902 + CCNA_00900 0.73 +1.3 979,903 - CCNA_00900 0.73 -1.2 979,922 - CCNA_00900 0.74 -2.7 979,973 + CCNA_00900 0.76 -1.4 979,974 + CCNA_00900 0.76 +1.1 979,981 - CCNA_00900 0.76 +3.1 979,981 - CCNA_00900 0.76 -0.1 979,993 + CCNA_00900 0.77 -1.1 980,000 + CCNA_00900 0.77 +2.0 980,048 - CCNA_00900 0.79 +0.1 980,154 + +3.3 980,192 + CCNA_00900 0.86 -0.3 980,192 + CCNA_00900 0.86 -1.2 980,192 + CCNA_00900 0.86 +1.0 980,236 + CCNA_00900 0.88 +1.5 980,236 + CCNA_00900 0.88 -0.5 980,244 - CCNA_00900 0.88 -0.6 980,278 + CCNA_00900 0.90 -1.9 980,282 - +0.7 980,282 - -1.1 980,284 + +3.0 980,324 + -1.8 980,332 - +1.8 980,338 + -0.1 980,361 + +0.5 980,402 - -0.1 980,405 + +0.4 980,494 + -2.6 980,502 - +1.6 980,502 - -1.5 980,538 + +1.4 980,546 - -1.4 980,577 - -2.8 980,590 + -1.3 980,608 + -2.3 980,632 - -0.4 980,820 - -0.7 980,822 + -0.7 980,822 + -2.6 980,822 + +1.8 980,822 + -0.2 980,847 - +1.1 980,869 + CCNA_00901 0.12 -1.0 980,874 + CCNA_00901 0.12 -1.2 980,883 - CCNA_00901 0.14 +0.1 980,925 + CCNA_00901 0.19 +2.6 980,971 + CCNA_00901 0.24 +0.1 980,971 + CCNA_00901 0.24 -1.0 980,971 + CCNA_00901 0.24 -0.8 980,979 - CCNA_00901 0.25 -0.4 980,979 - CCNA_00901 0.25 +1.5 980,979 - CCNA_00901 0.25 -1.8 980,979 - CCNA_00901 0.25 -2.1 981,018 + CCNA_00901 0.30 +0.7 981,024 + CCNA_00901 0.30 +0.7 981,048 + CCNA_00901 0.33 +1.4 981,056 - CCNA_00901 0.34 -0.8 981,093 - CCNA_00901 0.39 +0.5 981,102 + CCNA_00901 0.40 +1.2 981,118 + CCNA_00901 0.42 +0.1 981,128 + CCNA_00901 0.43 -1.3 981,128 + CCNA_00901 0.43 -0.3 981,128 + CCNA_00901 0.43 +1.0 981,136 - CCNA_00901 0.44 -1.4 981,136 - CCNA_00901 0.44 +0.3 981,154 + CCNA_00901 0.46 +1.7 981,155 + CCNA_00901 0.46 -1.1 981,163 - CCNA_00901 0.47 +0.5 981,200 - CCNA_00901 0.51 +0.1 981,200 - CCNA_00901 0.51 -1.6 981,223 - CCNA_00901 0.54 +1.6 981,223 - CCNA_00901 0.54 +0.1 981,223 - CCNA_00901 0.54 +1.8 981,228 - CCNA_00901 0.55 +0.0 981,317 + CCNA_00901 0.65 +2.2 981,325 - CCNA_00901 0.66 +0.7 981,325 - CCNA_00901 0.66 -0.0 981,382 - CCNA_00901 0.73 +2.1 981,386 + CCNA_00901 0.74 -0.7 981,386 + CCNA_00901 0.74 -1.6 981,401 + CCNA_00901 0.75 -0.3 981,401 + CCNA_00901 0.75 +1.2 981,401 + CCNA_00901 0.75 +1.3 981,404 - CCNA_00901 0.76 +0.8 981,406 + CCNA_00901 0.76 +0.4 981,407 - CCNA_00901 0.76 +3.3 981,409 - CCNA_00901 0.76 -1.0 981,457 - CCNA_00901 0.82 -3.4 981,488 - CCNA_00901 0.86 +1.0 981,495 + CCNA_00901 0.87 -2.3
Or see this region's nucleotide sequence