Experiment: PYE with Nalidixic 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00788 and CCNA_00789 are separated by 2 nucleotides CCNA_00789 and CCNA_00790 are separated by 175 nucleotides CCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_03939 and CCNA_00792 are separated by 340 nucleotides
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523
_00789
CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076
_00790
CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685
_03939
CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210
_00792
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 852.709 kb on - strand, within CCNA_00788 at 852.719 kb on + strand, within CCNA_00788 at 852.765 kb on + strand at 852.765 kb on + strand at 852.773 kb on - strand at 852.800 kb on - strand at 852.802 kb on + strand at 852.838 kb on + strand at 852.838 kb on + strand at 852.838 kb on + strand at 852.846 kb on - strand at 852.856 kb on - strand at 852.863 kb on + strand at 852.870 kb on + strand at 852.911 kb on + strand at 852.914 kb on - strand at 852.939 kb on + strand, within CCNA_00789 at 852.946 kb on + strand, within CCNA_00789 at 852.947 kb on - strand, within CCNA_00789 at 852.995 kb on + strand, within CCNA_00789 at 853.077 kb on + strand, within CCNA_00789 at 853.084 kb on + strand, within CCNA_00789 at 853.095 kb on + strand, within CCNA_00789 at 853.095 kb on + strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.103 kb on - strand, within CCNA_00789 at 853.114 kb on + strand, within CCNA_00789 at 853.186 kb on + strand, within CCNA_00789 at 853.261 kb on + strand, within CCNA_00789 at 853.269 kb on - strand, within CCNA_00789 at 853.357 kb on - strand, within CCNA_00789 at 853.414 kb on - strand, within CCNA_00789 at 853.461 kb on + strand at 853.497 kb on - strand at 853.528 kb on - strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.590 kb on + strand at 853.595 kb on + strand at 853.598 kb on - strand at 853.598 kb on - strand at 853.627 kb on - strand at 853.632 kb on + strand at 853.634 kb on + strand at 853.642 kb on - strand at 853.717 kb on - strand at 853.764 kb on + strand, within CCNA_00790 at 853.772 kb on - strand, within CCNA_00790 at 853.809 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.811 kb on + strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.819 kb on - strand, within CCNA_00790 at 853.844 kb on + strand, within CCNA_00790 at 853.854 kb on - strand, within CCNA_00790 at 853.864 kb on - strand, within CCNA_00790 at 853.937 kb on + strand, within CCNA_00790 at 853.941 kb on + strand, within CCNA_00790 at 853.981 kb on - strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 853.988 kb on + strand, within CCNA_00790 at 854.076 kb on + strand at 854.078 kb on + strand at 854.118 kb on - strand at 854.130 kb on - strand at 854.130 kb on - strand at 854.138 kb on + strand at 854.146 kb on - strand at 854.153 kb on + strand at 854.173 kb on - strand at 854.187 kb on + strand at 854.226 kb on + strand at 854.255 kb on - strand at 854.272 kb on + strand at 854.272 kb on + strand at 854.275 kb on - strand at 854.322 kb on - strand at 854.326 kb on + strand at 854.349 kb on + strand at 854.352 kb on - strand at 854.357 kb on - strand at 854.357 kb on - strand at 854.357 kb on - strand at 854.370 kb on - strand at 854.375 kb on + strand at 854.383 kb on - strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.427 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.447 kb on - strand, within CCNA_03939 at 854.498 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.524 kb on - strand, within CCNA_03939 at 854.539 kb on - strand, within CCNA_03939 at 854.540 kb on + strand, within CCNA_03939 at 854.546 kb on + strand, within CCNA_03939 at 854.563 kb on - strand, within CCNA_03939 at 854.587 kb on - strand, within CCNA_03939 at 854.596 kb on + strand, within CCNA_03939 at 854.681 kb on + strand at 854.686 kb on + strand at 854.701 kb on + strand at 854.709 kb on - strand at 854.709 kb on - strand at 854.709 kb on - strand at 854.739 kb on + strand at 854.749 kb on - strand at 854.752 kb on + strand at 854.752 kb on - strand at 854.762 kb on + strand at 854.768 kb on + strand at 854.776 kb on - strand at 854.776 kb on - strand at 854.820 kb on + strand at 854.820 kb on - strand at 854.828 kb on - strand at 854.828 kb on - strand at 854.900 kb on - strand at 854.947 kb on - strand at 854.948 kb on + strand at 854.948 kb on + strand at 854.958 kb on + strand at 854.984 kb on + strand at 855.033 kb on - strand at 855.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml remove 852,709 - CCNA_00788 0.88 +0.7 852,719 + CCNA_00788 0.88 -1.0 852,765 + +1.9 852,765 + -1.2 852,773 - +1.4 852,800 - +2.3 852,802 + +1.9 852,838 + -0.2 852,838 + -1.0 852,838 + -3.2 852,846 - +0.5 852,856 - -0.1 852,863 + -1.0 852,870 + -0.7 852,911 + -0.7 852,914 - -2.2 852,939 + CCNA_00789 0.10 -0.5 852,946 + CCNA_00789 0.11 +0.8 852,947 - CCNA_00789 0.11 -0.7 852,995 + CCNA_00789 0.19 -0.5 853,077 + CCNA_00789 0.31 -1.7 853,084 + CCNA_00789 0.32 -1.5 853,095 + CCNA_00789 0.34 -1.9 853,095 + CCNA_00789 0.34 +0.8 853,103 - CCNA_00789 0.35 -0.8 853,103 - CCNA_00789 0.35 -1.6 853,114 + CCNA_00789 0.37 +0.2 853,186 + CCNA_00789 0.48 -0.6 853,261 + CCNA_00789 0.60 -0.7 853,269 - CCNA_00789 0.61 -1.3 853,357 - CCNA_00789 0.74 -0.9 853,414 - CCNA_00789 0.83 -3.2 853,461 + -1.3 853,497 - -0.5 853,528 - +0.6 853,590 + -1.8 853,590 + +1.6 853,590 + -1.9 853,595 + -1.2 853,598 - +0.4 853,598 - -0.4 853,627 - +0.8 853,632 + +2.5 853,634 + -0.8 853,642 - +1.3 853,717 - -1.4 853,764 + CCNA_00790 0.17 -2.4 853,772 - CCNA_00790 0.19 +0.2 853,809 + CCNA_00790 0.29 -2.4 853,811 + CCNA_00790 0.30 -0.7 853,811 + CCNA_00790 0.30 -1.5 853,811 + CCNA_00790 0.30 -0.2 853,819 - CCNA_00790 0.32 -0.1 853,819 - CCNA_00790 0.32 -0.5 853,844 + CCNA_00790 0.38 +0.2 853,854 - CCNA_00790 0.41 -0.7 853,864 - CCNA_00790 0.44 -0.1 853,937 + CCNA_00790 0.63 -2.4 853,941 + CCNA_00790 0.64 +0.2 853,981 - CCNA_00790 0.75 +0.1 853,988 + CCNA_00790 0.76 -1.4 853,988 + CCNA_00790 0.76 +0.2 853,988 + CCNA_00790 0.76 -0.3 854,076 + +0.1 854,078 + -1.7 854,118 - +0.4 854,130 - +0.9 854,130 - +0.1 854,138 + +0.4 854,146 - -1.3 854,153 + +0.7 854,173 - +1.2 854,187 + -0.3 854,226 + +0.6 854,255 - +0.2 854,272 + +0.3 854,272 + +0.1 854,275 - +0.5 854,322 - +0.1 854,326 + +0.1 854,349 + -0.5 854,352 - -2.1 854,357 - -0.8 854,357 - +0.9 854,357 - +0.8 854,370 - +0.5 854,375 + -1.0 854,383 - +0.4 854,405 + -0.5 854,405 + -0.3 854,413 - +0.4 854,413 - +1.0 854,413 - +0.7 854,413 - -0.8 854,413 - -1.4 854,413 - +0.6 854,427 - CCNA_03939 0.11 +0.5 854,437 - CCNA_03939 0.14 -1.0 854,437 - CCNA_03939 0.14 -0.5 854,437 - CCNA_03939 0.14 -0.9 854,437 - CCNA_03939 0.14 +1.4 854,447 - CCNA_03939 0.18 +1.1 854,498 + CCNA_03939 0.35 +1.4 854,499 + CCNA_03939 0.36 +1.5 854,524 - CCNA_03939 0.44 +0.5 854,539 - CCNA_03939 0.49 -2.5 854,540 + CCNA_03939 0.50 +1.7 854,546 + CCNA_03939 0.52 +0.5 854,563 - CCNA_03939 0.58 +1.1 854,587 - CCNA_03939 0.66 +2.3 854,596 + CCNA_03939 0.69 +2.6 854,681 + -1.9 854,686 + -0.4 854,701 + -0.1 854,709 - +0.7 854,709 - -1.7 854,709 - -0.8 854,739 + +0.9 854,749 - +1.3 854,752 + +1.6 854,752 - -0.6 854,762 + -1.3 854,768 + -1.3 854,776 - +1.8 854,776 - +1.1 854,820 + +0.2 854,820 - +1.0 854,828 - +0.3 854,828 - -0.6 854,900 - +1.1 854,947 - -0.1 854,948 + -0.0 854,948 + +0.9 854,958 + +1.6 854,984 + +2.1 855,033 - +0.8 855,059 + +0.4
Or see this region's nucleotide sequence