Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00509

Experiment: PYE with Nalidixic 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00507 and CCNA_00508 are separated by 67 nucleotidesCCNA_00508 and CCNA_00509 are separated by 65 nucleotidesCCNA_00509 and CCNA_00510 overlap by 4 nucleotidesCCNA_00510 and CCNA_00511 overlap by 1 nucleotides CCNA_00507: CCNA_00507 - cytochrome c1, at 522,241 to 523,086 _00507 CCNA_00508: CCNA_00508 - aspartate protease, at 523,154 to 523,927 _00508 CCNA_00509: CCNA_00509 - phosphoglycerate mutase family, at 523,993 to 524,526 _00509 CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 Position (kb) 523 524 525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 523.019 kb on + strandat 523.041 kb on + strandat 523.049 kb on - strandat 523.172 kb on + strandat 523.252 kb on + strand, within CCNA_00508at 523.252 kb on + strand, within CCNA_00508at 523.252 kb on + strand, within CCNA_00508at 523.260 kb on - strand, within CCNA_00508at 523.260 kb on - strand, within CCNA_00508at 523.278 kb on + strand, within CCNA_00508at 523.369 kb on - strand, within CCNA_00508at 523.491 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.518 kb on + strand, within CCNA_00508at 523.523 kb on + strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.526 kb on - strand, within CCNA_00508at 523.586 kb on - strand, within CCNA_00508at 523.735 kb on + strand, within CCNA_00508at 523.748 kb on - strand, within CCNA_00508at 523.748 kb on - strand, within CCNA_00508at 523.755 kb on - strand, within CCNA_00508at 523.778 kb on - strand, within CCNA_00508at 523.814 kb on + strand, within CCNA_00508at 523.836 kb on + strand, within CCNA_00508at 523.844 kb on - strand, within CCNA_00508at 523.878 kb on + strandat 523.883 kb on + strandat 523.886 kb on - strandat 523.886 kb on - strandat 523.891 kb on - strandat 523.931 kb on - strandat 523.935 kb on + strandat 523.945 kb on + strandat 523.945 kb on + strandat 523.945 kb on + strandat 523.953 kb on - strandat 523.953 kb on - strandat 523.953 kb on - strandat 523.970 kb on + strandat 523.988 kb on - strandat 524.008 kb on + strandat 524.008 kb on + strandat 524.008 kb on + strandat 524.024 kb on + strandat 524.058 kb on + strand, within CCNA_00509at 524.117 kb on + strand, within CCNA_00509at 524.125 kb on - strand, within CCNA_00509at 524.150 kb on + strand, within CCNA_00509at 524.150 kb on + strand, within CCNA_00509at 524.150 kb on + strand, within CCNA_00509at 524.150 kb on + strand, within CCNA_00509at 524.156 kb on - strand, within CCNA_00509at 524.158 kb on - strand, within CCNA_00509at 524.178 kb on - strand, within CCNA_00509at 524.185 kb on + strand, within CCNA_00509at 524.185 kb on - strand, within CCNA_00509at 524.193 kb on - strand, within CCNA_00509at 524.193 kb on - strand, within CCNA_00509at 524.220 kb on + strand, within CCNA_00509at 524.223 kb on - strand, within CCNA_00509at 524.228 kb on - strand, within CCNA_00509at 524.282 kb on + strand, within CCNA_00509at 524.287 kb on + strand, within CCNA_00509at 524.304 kb on - strand, within CCNA_00509at 524.317 kb on - strand, within CCNA_00509at 524.331 kb on - strand, within CCNA_00509at 524.341 kb on - strand, within CCNA_00509at 524.363 kb on + strand, within CCNA_00509at 524.369 kb on + strand, within CCNA_00509at 524.409 kb on - strand, within CCNA_00509at 524.417 kb on + strand, within CCNA_00509at 524.417 kb on + strand, within CCNA_00509at 524.493 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.502 kb on - strandat 524.561 kb on + strandat 524.561 kb on + strandat 524.569 kb on - strandat 524.569 kb on - strandat 524.577 kb on - strandat 524.620 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.638 kb on - strand, within CCNA_00510at 524.643 kb on - strand, within CCNA_00510at 524.648 kb on - strand, within CCNA_00510at 524.713 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.748 kb on - strand, within CCNA_00510at 524.795 kb on + strand, within CCNA_00510at 524.805 kb on - strand, within CCNA_00510at 524.855 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.870 kb on - strand, within CCNA_00510at 524.871 kb on - strand, within CCNA_00510at 524.895 kb on + strand, within CCNA_00510at 524.895 kb on + strand, within CCNA_00510at 524.907 kb on + strand, within CCNA_00510at 524.922 kb on + strand, within CCNA_00510at 524.979 kb on - strand, within CCNA_00510at 525.026 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.047 kb on + strand, within CCNA_00510at 525.053 kb on + strand, within CCNA_00510at 525.066 kb on - strand, within CCNA_00510at 525.087 kb on + strand, within CCNA_00510at 525.117 kb on + strand, within CCNA_00510at 525.120 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.148 kb on - strandat 525.159 kb on + strandat 525.227 kb on - strandat 525.250 kb on + strandat 525.265 kb on + strandat 525.317 kb on + strand, within CCNA_00511at 525.330 kb on + strand, within CCNA_00511at 525.331 kb on + strand, within CCNA_00511at 525.357 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.367 kb on + strand, within CCNA_00511at 525.408 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.449 kb on - strand, within CCNA_00511at 525.472 kb on - strand, within CCNA_00511at 525.499 kb on - strand, within CCNA_00511at 525.508 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nalidixic 0.06 mg/ml
remove
523,019 + +1.8
523,041 + +2.4
523,049 - +0.5
523,172 + +1.6
523,252 + CCNA_00508 0.13 -1.6
523,252 + CCNA_00508 0.13 +2.4
523,252 + CCNA_00508 0.13 -1.2
523,260 - CCNA_00508 0.14 +0.5
523,260 - CCNA_00508 0.14 -2.9
523,278 + CCNA_00508 0.16 -3.9
523,369 - CCNA_00508 0.28 +1.3
523,491 + CCNA_00508 0.44 -2.2
523,518 + CCNA_00508 0.47 +1.8
523,518 + CCNA_00508 0.47 -0.0
523,518 + CCNA_00508 0.47 -3.2
523,518 + CCNA_00508 0.47 +0.4
523,518 + CCNA_00508 0.47 +1.7
523,518 + CCNA_00508 0.47 -0.7
523,518 + CCNA_00508 0.47 +1.0
523,518 + CCNA_00508 0.47 +0.0
523,518 + CCNA_00508 0.47 +1.4
523,518 + CCNA_00508 0.47 +2.2
523,518 + CCNA_00508 0.47 +0.6
523,523 + CCNA_00508 0.48 +1.6
523,526 - CCNA_00508 0.48 +1.3
523,526 - CCNA_00508 0.48 +0.3
523,526 - CCNA_00508 0.48 +1.3
523,526 - CCNA_00508 0.48 +1.9
523,526 - CCNA_00508 0.48 -0.9
523,526 - CCNA_00508 0.48 +0.2
523,526 - CCNA_00508 0.48 +0.9
523,526 - CCNA_00508 0.48 +0.9
523,526 - CCNA_00508 0.48 +0.4
523,526 - CCNA_00508 0.48 +0.2
523,526 - CCNA_00508 0.48 -0.6
523,586 - CCNA_00508 0.56 +0.8
523,735 + CCNA_00508 0.75 -0.5
523,748 - CCNA_00508 0.77 -0.4
523,748 - CCNA_00508 0.77 +1.0
523,755 - CCNA_00508 0.78 -0.6
523,778 - CCNA_00508 0.81 -0.6
523,814 + CCNA_00508 0.85 -0.1
523,836 + CCNA_00508 0.88 +0.5
523,844 - CCNA_00508 0.89 +1.3
523,878 + -0.1
523,883 + +1.8
523,886 - +1.6
523,886 - -1.6
523,891 - -1.2
523,931 - -0.7
523,935 + -2.0
523,945 + +0.5
523,945 + -2.5
523,945 + -2.6
523,953 - +1.9
523,953 - +1.8
523,953 - +0.9
523,970 + -1.6
523,988 - -1.0
524,008 + +2.1
524,008 + +0.9
524,008 + -1.0
524,024 + +0.5
524,058 + CCNA_00509 0.12 +3.1
524,117 + CCNA_00509 0.23 +0.5
524,125 - CCNA_00509 0.25 +3.4
524,150 + CCNA_00509 0.29 +1.3
524,150 + CCNA_00509 0.29 +0.6
524,150 + CCNA_00509 0.29 +2.4
524,150 + CCNA_00509 0.29 +1.9
524,156 - CCNA_00509 0.31 -0.3
524,158 - CCNA_00509 0.31 +1.2
524,178 - CCNA_00509 0.35 -1.3
524,185 + CCNA_00509 0.36 -2.2
524,185 - CCNA_00509 0.36 -2.6
524,193 - CCNA_00509 0.37 -0.6
524,193 - CCNA_00509 0.37 +1.0
524,220 + CCNA_00509 0.43 -2.2
524,223 - CCNA_00509 0.43 +1.0
524,228 - CCNA_00509 0.44 -1.8
524,282 + CCNA_00509 0.54 +0.9
524,287 + CCNA_00509 0.55 +1.6
524,304 - CCNA_00509 0.58 +5.1
524,317 - CCNA_00509 0.61 -0.2
524,331 - CCNA_00509 0.63 +1.2
524,341 - CCNA_00509 0.65 +0.3
524,363 + CCNA_00509 0.69 -0.1
524,369 + CCNA_00509 0.70 +0.4
524,409 - CCNA_00509 0.78 +0.3
524,417 + CCNA_00509 0.79 -1.9
524,417 + CCNA_00509 0.79 -0.9
524,493 + -0.9
524,494 + +2.4
524,494 + -1.8
524,494 + +0.7
524,494 + -0.7
524,502 - -3.4
524,561 + -1.8
524,561 + +0.5
524,569 - -3.8
524,569 - +2.2
524,577 - -0.2
524,620 + CCNA_00510 0.14 +0.5
524,625 + CCNA_00510 0.15 -0.4
524,625 + CCNA_00510 0.15 -1.3
524,625 + CCNA_00510 0.15 +1.2
524,638 - CCNA_00510 0.17 +1.2
524,643 - CCNA_00510 0.18 -1.0
524,648 - CCNA_00510 0.18 +0.2
524,713 + CCNA_00510 0.28 -2.3
524,724 + CCNA_00510 0.30 -0.3
524,724 + CCNA_00510 0.30 -1.8
524,724 + CCNA_00510 0.30 +1.1
524,724 + CCNA_00510 0.30 -0.7
524,732 - CCNA_00510 0.31 +1.7
524,748 - CCNA_00510 0.33 -0.9
524,795 + CCNA_00510 0.40 -0.6
524,805 - CCNA_00510 0.42 -1.2
524,855 + CCNA_00510 0.49 -1.3
524,863 + CCNA_00510 0.50 +3.2
524,863 + CCNA_00510 0.50 -0.8
524,870 - CCNA_00510 0.51 +0.6
524,871 - CCNA_00510 0.51 +0.2
524,895 + CCNA_00510 0.55 -0.9
524,895 + CCNA_00510 0.55 +1.2
524,907 + CCNA_00510 0.57 -1.9
524,922 + CCNA_00510 0.59 -0.2
524,979 - CCNA_00510 0.67 -1.3
525,026 + CCNA_00510 0.74 +0.3
525,032 + CCNA_00510 0.75 +0.5
525,034 + CCNA_00510 0.75 +1.8
525,034 + CCNA_00510 0.75 +0.1
525,039 + CCNA_00510 0.76 +0.3
525,039 + CCNA_00510 0.76 -1.9
525,042 - CCNA_00510 0.77 +1.7
525,042 - CCNA_00510 0.77 -1.6
525,047 + CCNA_00510 0.77 +2.4
525,053 + CCNA_00510 0.78 +0.4
525,066 - CCNA_00510 0.80 -1.4
525,087 + CCNA_00510 0.83 -0.9
525,117 + CCNA_00510 0.88 -1.0
525,120 - CCNA_00510 0.88 -2.6
525,148 - -2.5
525,148 - -2.3
525,159 + +0.9
525,227 - +1.3
525,250 + -1.5
525,265 + -0.8
525,317 + CCNA_00511 0.17 -1.5
525,330 + CCNA_00511 0.19 +1.7
525,331 + CCNA_00511 0.19 -0.0
525,357 + CCNA_00511 0.23 -2.5
525,365 - CCNA_00511 0.24 -1.0
525,365 - CCNA_00511 0.24 -0.4
525,367 + CCNA_00511 0.25 +1.6
525,408 - CCNA_00511 0.31 -1.4
525,437 - CCNA_00511 0.35 -1.8
525,449 - CCNA_00511 0.37 +1.0
525,472 - CCNA_00511 0.40 -2.0
525,499 - CCNA_00511 0.44 -1.6
525,508 + CCNA_00511 0.45 -1.6
525,517 - CCNA_00511 0.47 -1.9
525,517 - CCNA_00511 0.47 -1.2

Or see this region's nucleotide sequence