Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33895

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33890 and BPHYT_RS33895 are separated by 139 nucleotidesBPHYT_RS33895 and BPHYT_RS33900 are separated by 338 nucleotides BPHYT_RS33890: BPHYT_RS33890 - fimbrial protein FimV, at 3,195,022 to 3,196,923 _RS33890 BPHYT_RS33895: BPHYT_RS33895 - aspartate-semialdehyde dehydrogenase, at 3,197,063 to 3,198,184 _RS33895 BPHYT_RS33900: BPHYT_RS33900 - 3-isopropylmalate dehydrogenase, at 3,198,523 to 3,199,590 _RS33900 Position (kb) 3197 3198 3199Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3196.257 kb on + strand, within BPHYT_RS33890at 3196.258 kb on - strand, within BPHYT_RS33890at 3196.293 kb on + strand, within BPHYT_RS33890at 3196.483 kb on - strand, within BPHYT_RS33890at 3196.483 kb on - strand, within BPHYT_RS33890at 3196.500 kb on + strand, within BPHYT_RS33890at 3196.501 kb on - strand, within BPHYT_RS33890at 3196.501 kb on - strand, within BPHYT_RS33890at 3196.764 kb on + strandat 3196.894 kb on - strandat 3196.981 kb on - strandat 3196.981 kb on - strandat 3197.037 kb on + strandat 3197.060 kb on - strandat 3197.060 kb on - strandat 3197.064 kb on + strandat 3197.065 kb on - strandat 3198.326 kb on - strandat 3198.326 kb on - strandat 3198.409 kb on + strandat 3198.410 kb on - strandat 3198.410 kb on - strandat 3198.411 kb on + strandat 3198.411 kb on + strandat 3198.412 kb on - strandat 3198.412 kb on - strandat 3198.474 kb on + strandat 3198.514 kb on + strandat 3198.514 kb on + strandat 3198.606 kb on - strandat 3198.675 kb on - strand, within BPHYT_RS33900at 3198.767 kb on + strand, within BPHYT_RS33900at 3198.768 kb on - strand, within BPHYT_RS33900at 3198.932 kb on + strand, within BPHYT_RS33900at 3198.932 kb on + strand, within BPHYT_RS33900at 3198.932 kb on + strand, within BPHYT_RS33900at 3198.932 kb on + strand, within BPHYT_RS33900at 3198.932 kb on + strand, within BPHYT_RS33900at 3198.933 kb on - strandat 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900at 3198.933 kb on - strand, within BPHYT_RS33900

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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3,196,257 + BPHYT_RS33890 0.65 +1.0
3,196,258 - BPHYT_RS33890 0.65 +0.7
3,196,293 + BPHYT_RS33890 0.67 +0.5
3,196,483 - BPHYT_RS33890 0.77 -0.7
3,196,483 - BPHYT_RS33890 0.77 -0.3
3,196,500 + BPHYT_RS33890 0.78 +0.4
3,196,501 - BPHYT_RS33890 0.78 -0.1
3,196,501 - BPHYT_RS33890 0.78 -0.7
3,196,764 + +0.0
3,196,894 - -0.2
3,196,981 - -0.3
3,196,981 - -0.1
3,197,037 + -1.9
3,197,060 - -0.6
3,197,060 - -0.7
3,197,064 + +2.8
3,197,065 - -0.0
3,198,326 - -0.9
3,198,326 - -1.0
3,198,409 + -1.4
3,198,410 - -0.7
3,198,410 - +0.7
3,198,411 + -3.2
3,198,411 + -1.8
3,198,412 - -0.9
3,198,412 - +0.1
3,198,474 + -2.6
3,198,514 + +1.2
3,198,514 + +0.7
3,198,606 - -5.3
3,198,675 - BPHYT_RS33900 0.14 -4.4
3,198,767 + BPHYT_RS33900 0.23 -5.6
3,198,768 - BPHYT_RS33900 0.23 -4.3
3,198,932 + BPHYT_RS33900 0.38 -3.1
3,198,932 + BPHYT_RS33900 0.38 -2.9
3,198,932 + BPHYT_RS33900 0.38 -3.7
3,198,932 + BPHYT_RS33900 0.38 -2.9
3,198,932 + BPHYT_RS33900 0.38 -3.1
3,198,933 - +1.9
3,198,933 - BPHYT_RS33900 0.38 -4.2
3,198,933 - BPHYT_RS33900 0.38 -5.3
3,198,933 - BPHYT_RS33900 0.38 -2.0
3,198,933 - BPHYT_RS33900 0.38 -2.3
3,198,933 - BPHYT_RS33900 0.38 -3.7
3,198,933 - BPHYT_RS33900 0.38 -1.4
3,198,933 - BPHYT_RS33900 0.38 -5.1
3,198,933 - BPHYT_RS33900 0.38 -4.9
3,198,933 - BPHYT_RS33900 0.38 -3.2

Or see this region's nucleotide sequence