Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33865

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33860 and BPHYT_RS33865 are separated by 80 nucleotidesBPHYT_RS33865 and BPHYT_RS33870 are separated by 50 nucleotidesBPHYT_RS33870 and BPHYT_RS33875 are separated by 11 nucleotides BPHYT_RS33860: BPHYT_RS33860 - acetyl-CoA carboxylase carboxyl transferase subunit beta, at 3,188,745 to 3,189,617 _RS33860 BPHYT_RS33865: BPHYT_RS33865 - tryptophan synthase alpha chain, at 3,189,698 to 3,190,510 _RS33865 BPHYT_RS33870: BPHYT_RS33870 - DNA methylase N-4, at 3,190,561 to 3,191,466 _RS33870 BPHYT_RS33875: BPHYT_RS33875 - tryptophan synthase subunit alpha, at 3,191,478 to 3,192,671 _RS33875 Position (kb) 3189 3190 3191Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3189.693 kb on - strandat 3189.984 kb on + strand, within BPHYT_RS33865at 3189.984 kb on + strand, within BPHYT_RS33865at 3189.984 kb on + strand, within BPHYT_RS33865at 3189.985 kb on - strand, within BPHYT_RS33865at 3189.985 kb on - strand, within BPHYT_RS33865at 3189.985 kb on - strand, within BPHYT_RS33865at 3189.985 kb on - strand, within BPHYT_RS33865at 3189.985 kb on - strand, within BPHYT_RS33865at 3189.988 kb on - strand, within BPHYT_RS33865at 3189.988 kb on - strand, within BPHYT_RS33865at 3189.988 kb on - strand, within BPHYT_RS33865at 3189.993 kb on + strand, within BPHYT_RS33865at 3189.993 kb on + strand, within BPHYT_RS33865at 3190.024 kb on + strand, within BPHYT_RS33865at 3190.099 kb on + strand, within BPHYT_RS33865at 3190.466 kb on - strandat 3190.502 kb on - strandat 3190.515 kb on + strandat 3190.515 kb on + strandat 3190.881 kb on - strand, within BPHYT_RS33870at 3190.881 kb on - strand, within BPHYT_RS33870at 3190.899 kb on + strand, within BPHYT_RS33870at 3190.900 kb on - strand, within BPHYT_RS33870at 3190.900 kb on - strand, within BPHYT_RS33870at 3191.153 kb on + strand, within BPHYT_RS33870at 3191.184 kb on + strand, within BPHYT_RS33870at 3191.255 kb on + strand, within BPHYT_RS33870at 3191.255 kb on + strand, within BPHYT_RS33870at 3191.288 kb on - strand, within BPHYT_RS33870at 3191.323 kb on + strand, within BPHYT_RS33870at 3191.324 kb on - strand, within BPHYT_RS33870

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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3,189,693 - +1.3
3,189,984 + BPHYT_RS33865 0.35 -2.7
3,189,984 + BPHYT_RS33865 0.35 -3.9
3,189,984 + BPHYT_RS33865 0.35 -4.4
3,189,985 - BPHYT_RS33865 0.35 -2.3
3,189,985 - BPHYT_RS33865 0.35 -2.4
3,189,985 - BPHYT_RS33865 0.35 -6.1
3,189,985 - BPHYT_RS33865 0.35 -2.6
3,189,985 - BPHYT_RS33865 0.35 -3.0
3,189,988 - BPHYT_RS33865 0.36 -2.7
3,189,988 - BPHYT_RS33865 0.36 -5.2
3,189,988 - BPHYT_RS33865 0.36 -2.4
3,189,993 + BPHYT_RS33865 0.36 -3.0
3,189,993 + BPHYT_RS33865 0.36 -3.3
3,190,024 + BPHYT_RS33865 0.40 -3.7
3,190,099 + BPHYT_RS33865 0.49 -2.1
3,190,466 - -0.4
3,190,502 - -3.3
3,190,515 + -2.3
3,190,515 + -3.3
3,190,881 - BPHYT_RS33870 0.35 -1.9
3,190,881 - BPHYT_RS33870 0.35 -0.6
3,190,899 + BPHYT_RS33870 0.37 -0.5
3,190,900 - BPHYT_RS33870 0.37 +0.6
3,190,900 - BPHYT_RS33870 0.37 -0.3
3,191,153 + BPHYT_RS33870 0.65 +1.1
3,191,184 + BPHYT_RS33870 0.69 -0.8
3,191,255 + BPHYT_RS33870 0.77 +0.9
3,191,255 + BPHYT_RS33870 0.77 -0.3
3,191,288 - BPHYT_RS33870 0.80 -2.5
3,191,323 + BPHYT_RS33870 0.84 -2.0
3,191,324 - BPHYT_RS33870 0.84 +0.7

Or see this region's nucleotide sequence