Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31000

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30990 and BPHYT_RS30995 overlap by 4 nucleotidesBPHYT_RS30995 and BPHYT_RS31000 are separated by 3 nucleotidesBPHYT_RS31000 and BPHYT_RS31005 are separated by 121 nucleotides BPHYT_RS30990: BPHYT_RS30990 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,508,454 to 2,509,002 _RS30990 BPHYT_RS30995: BPHYT_RS30995 - glucose-1-phosphate thymidylyltransferase, at 2,508,999 to 2,509,886 _RS30995 BPHYT_RS31000: BPHYT_RS31000 - dTDP-glucose 4,6-dehydratase, at 2,509,890 to 2,510,951 _RS31000 BPHYT_RS31005: BPHYT_RS31005 - hypothetical protein, at 2,511,073 to 2,512,074 _RS31005 Position (kb) 2509 2510 2511Strain fitness (log2 ratio) -1 0 1at 2509.789 kb on + strand, within BPHYT_RS30995at 2510.276 kb on - strand, within BPHYT_RS31000

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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2,509,789 + BPHYT_RS30995 0.89 -0.5
2,510,276 - BPHYT_RS31000 0.36 +1.2

Or see this region's nucleotide sequence