Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18560 and BPHYT_RS18565 are separated by 69 nucleotides BPHYT_RS18565 and BPHYT_RS18570 are separated by 126 nucleotides
BPHYT_RS18560: BPHYT_RS18560 - glucosamine--fructose-6-phosphate aminotransferase, at 4,174,924 to 4,176,741
_RS18560
BPHYT_RS18565: BPHYT_RS18565 - bifunctional protein GlmU, at 4,176,811 to 4,178,172
_RS18565
BPHYT_RS18570: BPHYT_RS18570 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 4,178,299 to 4,179,309
_RS18570
Position (kb) 4176
4177
4178
4179 Strain fitness (log2 ratio) -1
0
1 at 4176.765 kb on - strand at 4176.810 kb on - strand at 4178.503 kb on - strand, within BPHYT_RS18570 at 4178.630 kb on + strand, within BPHYT_RS18570 at 4178.631 kb on - strand, within BPHYT_RS18570 at 4178.657 kb on + strand, within BPHYT_RS18570 at 4178.679 kb on + strand, within BPHYT_RS18570 at 4178.680 kb on - strand, within BPHYT_RS18570 at 4178.735 kb on + strand, within BPHYT_RS18570 at 4178.735 kb on + strand, within BPHYT_RS18570 at 4178.735 kb on + strand, within BPHYT_RS18570 at 4178.736 kb on - strand, within BPHYT_RS18570 at 4178.904 kb on - strand, within BPHYT_RS18570 at 4178.904 kb on - strand, within BPHYT_RS18570 at 4179.068 kb on + strand, within BPHYT_RS18570 at 4179.068 kb on + strand, within BPHYT_RS18570 at 4179.069 kb on - strand, within BPHYT_RS18570 at 4179.069 kb on - strand, within BPHYT_RS18570
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 4,176,765 - +0.8 4,176,810 - +0.5 4,178,503 - BPHYT_RS18570 0.20 +0.1 4,178,630 + BPHYT_RS18570 0.33 +0.0 4,178,631 - BPHYT_RS18570 0.33 -0.5 4,178,657 + BPHYT_RS18570 0.35 -0.5 4,178,679 + BPHYT_RS18570 0.38 +0.1 4,178,680 - BPHYT_RS18570 0.38 +0.2 4,178,735 + BPHYT_RS18570 0.43 +0.1 4,178,735 + BPHYT_RS18570 0.43 +0.0 4,178,735 + BPHYT_RS18570 0.43 -0.1 4,178,736 - BPHYT_RS18570 0.43 +1.2 4,178,904 - BPHYT_RS18570 0.60 -0.0 4,178,904 - BPHYT_RS18570 0.60 +0.2 4,179,068 + BPHYT_RS18570 0.76 +0.5 4,179,068 + BPHYT_RS18570 0.76 +0.1 4,179,069 - BPHYT_RS18570 0.76 +0.3 4,179,069 - BPHYT_RS18570 0.76 -0.3
Or see this region's nucleotide sequence