Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09380

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09375 and BPHYT_RS09380 overlap by 11 nucleotidesBPHYT_RS09380 and BPHYT_RS09385 are separated by 7 nucleotides BPHYT_RS09375: BPHYT_RS09375 - (2Fe-2S)-binding protein, at 2,123,854 to 2,125,260 _RS09375 BPHYT_RS09380: BPHYT_RS09380 - NAD(FAD)-dependent dehydrogenase, at 2,125,250 to 2,125,630 _RS09380 BPHYT_RS09385: BPHYT_RS09385 - FAD-dependent oxidoreductase, at 2,125,638 to 2,126,774 _RS09385 Position (kb) 2125 2126Strain fitness (log2 ratio) -3 -2 -1 0 1at 2124.667 kb on - strand, within BPHYT_RS09375at 2124.667 kb on - strand, within BPHYT_RS09375at 2124.743 kb on + strand, within BPHYT_RS09375at 2124.761 kb on + strand, within BPHYT_RS09375at 2124.959 kb on + strand, within BPHYT_RS09375at 2124.959 kb on + strand, within BPHYT_RS09375at 2124.960 kb on - strand, within BPHYT_RS09375at 2125.115 kb on + strand, within BPHYT_RS09375at 2126.594 kb on - strand, within BPHYT_RS09385

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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2,124,667 - BPHYT_RS09375 0.58 +0.1
2,124,667 - BPHYT_RS09375 0.58 -0.8
2,124,743 + BPHYT_RS09375 0.63 +0.6
2,124,761 + BPHYT_RS09375 0.64 -0.4
2,124,959 + BPHYT_RS09375 0.79 -0.5
2,124,959 + BPHYT_RS09375 0.79 -0.9
2,124,960 - BPHYT_RS09375 0.79 -1.0
2,125,115 + BPHYT_RS09375 0.90 -0.6
2,126,594 - BPHYT_RS09385 0.84 -2.8

Or see this region's nucleotide sequence