Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09155

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09150 and BPHYT_RS09155 are separated by 182 nucleotidesBPHYT_RS09155 and BPHYT_RS09160 are separated by 131 nucleotides BPHYT_RS09150: BPHYT_RS09150 - acetyl-CoA acetyltransferase, at 2,071,153 to 2,072,334 _RS09150 BPHYT_RS09155: BPHYT_RS09155 - 3-ketoacyl-ACP reductase, at 2,072,517 to 2,073,257 _RS09155 BPHYT_RS09160: BPHYT_RS09160 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,073,389 to 2,074,018 _RS09160 Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -3 -2 -1 0 1at 2071.606 kb on + strand, within BPHYT_RS09150at 2071.615 kb on + strand, within BPHYT_RS09150at 2071.987 kb on + strand, within BPHYT_RS09150at 2071.987 kb on + strand, within BPHYT_RS09150at 2071.987 kb on + strand, within BPHYT_RS09150at 2072.289 kb on + strandat 2072.290 kb on - strandat 2072.290 kb on - strandat 2072.511 kb on + strandat 2072.512 kb on - strandat 2072.535 kb on + strandat 2072.535 kb on + strandat 2072.598 kb on + strand, within BPHYT_RS09155at 2072.789 kb on + strand, within BPHYT_RS09155at 2072.973 kb on + strand, within BPHYT_RS09155at 2072.973 kb on + strand, within BPHYT_RS09155at 2072.973 kb on + strand, within BPHYT_RS09155at 2073.069 kb on + strand, within BPHYT_RS09155at 2073.248 kb on + strandat 2073.367 kb on - strandat 2073.386 kb on + strandat 2073.397 kb on + strandat 2073.397 kb on + strandat 2073.398 kb on - strandat 2073.474 kb on - strand, within BPHYT_RS09160at 2073.474 kb on - strand, within BPHYT_RS09160at 2073.474 kb on - strand, within BPHYT_RS09160at 2073.650 kb on + strand, within BPHYT_RS09160at 2073.684 kb on - strand, within BPHYT_RS09160at 2073.752 kb on + strand, within BPHYT_RS09160at 2073.836 kb on + strand, within BPHYT_RS09160at 2073.836 kb on + strand, within BPHYT_RS09160at 2073.837 kb on - strand, within BPHYT_RS09160at 2073.837 kb on - strand, within BPHYT_RS09160at 2074.016 kb on + strandat 2074.149 kb on + strandat 2074.149 kb on + strandat 2074.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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2,071,606 + BPHYT_RS09150 0.38 +0.2
2,071,615 + BPHYT_RS09150 0.39 -0.5
2,071,987 + BPHYT_RS09150 0.71 -0.8
2,071,987 + BPHYT_RS09150 0.71 +0.4
2,071,987 + BPHYT_RS09150 0.71 -0.2
2,072,289 + -0.8
2,072,290 - +0.3
2,072,290 - -1.0
2,072,511 + -1.3
2,072,512 - -0.6
2,072,535 + +0.5
2,072,535 + -2.0
2,072,598 + BPHYT_RS09155 0.11 -1.0
2,072,789 + BPHYT_RS09155 0.37 -1.0
2,072,973 + BPHYT_RS09155 0.62 -2.0
2,072,973 + BPHYT_RS09155 0.62 -1.5
2,072,973 + BPHYT_RS09155 0.62 -3.0
2,073,069 + BPHYT_RS09155 0.74 -1.8
2,073,248 + -2.6
2,073,367 - -0.3
2,073,386 + -0.6
2,073,397 + -1.3
2,073,397 + +0.0
2,073,398 - +0.3
2,073,474 - BPHYT_RS09160 0.13 -0.6
2,073,474 - BPHYT_RS09160 0.13 -0.0
2,073,474 - BPHYT_RS09160 0.13 -0.1
2,073,650 + BPHYT_RS09160 0.41 +0.2
2,073,684 - BPHYT_RS09160 0.47 -0.2
2,073,752 + BPHYT_RS09160 0.58 -0.7
2,073,836 + BPHYT_RS09160 0.71 -1.0
2,073,836 + BPHYT_RS09160 0.71 -1.2
2,073,837 - BPHYT_RS09160 0.71 -1.2
2,073,837 - BPHYT_RS09160 0.71 +0.1
2,074,016 + +0.7
2,074,149 + -0.0
2,074,149 + -0.4
2,074,150 - -2.0

Or see this region's nucleotide sequence