Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04275

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04265 and BPHYT_RS04270 are separated by 10 nucleotidesBPHYT_RS04270 and BPHYT_RS04275 overlap by 16 nucleotidesBPHYT_RS04275 and BPHYT_RS04280 are separated by 9 nucleotidesBPHYT_RS04280 and BPHYT_RS04285 overlap by 19 nucleotides BPHYT_RS04265: BPHYT_RS04265 - dTDP-glucose 4,6-dehydratase, at 977,361 to 978,422 _RS04265 BPHYT_RS04270: BPHYT_RS04270 - glucose-1-phosphate thymidylyltransferase, at 978,433 to 979,326 _RS04270 BPHYT_RS04275: BPHYT_RS04275 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 979,311 to 979,862 _RS04275 BPHYT_RS04280: BPHYT_RS04280 - dTDP-4-dehydrorhamnose reductase, at 979,872 to 980,768 _RS04280 BPHYT_RS04285: BPHYT_RS04285 - rhamnosyltransferase, at 980,750 to 981,661 _RS04285 Position (kb) 979 980Strain fitness (log2 ratio) -2 -1 0 1at 978.381 kb on + strandat 978.405 kb on + strandat 978.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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978,381 + -1.8
978,405 + +0.1
978,405 + +0.5

Or see this region's nucleotide sequence