Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3803 and Ac3H11_3804 are separated by 370 nucleotides Ac3H11_3804 and Ac3H11_3805 overlap by 4 nucleotides
Ac3H11_3803 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 13,486 to 16,455
_3803
Ac3H11_3804 - Putative formate dehydrogenase-specific chaperone, at 16,826 to 17,461
_3804
Ac3H11_3805 - Iron-sulfur cluster-binding protein, at 17,458 to 19,527
_3805
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 15.887 kb on + strand, within Ac3H11_3803 at 15.887 kb on + strand, within Ac3H11_3803 at 15.887 kb on + strand, within Ac3H11_3803 at 15.888 kb on - strand, within Ac3H11_3803 at 15.888 kb on - strand, within Ac3H11_3803 at 15.888 kb on - strand, within Ac3H11_3803 at 15.888 kb on - strand, within Ac3H11_3803 at 15.926 kb on + strand, within Ac3H11_3803 at 15.926 kb on + strand, within Ac3H11_3803 at 15.927 kb on - strand, within Ac3H11_3803 at 15.927 kb on - strand, within Ac3H11_3803 at 15.927 kb on - strand, within Ac3H11_3803 at 15.927 kb on - strand, within Ac3H11_3803 at 15.927 kb on - strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.013 kb on + strand, within Ac3H11_3803 at 16.014 kb on - strand, within Ac3H11_3803 at 16.014 kb on - strand, within Ac3H11_3803 at 16.014 kb on - strand, within Ac3H11_3803 at 16.014 kb on - strand, within Ac3H11_3803 at 16.014 kb on - strand, within Ac3H11_3803 at 16.053 kb on - strand, within Ac3H11_3803 at 16.203 kb on + strand at 16.203 kb on + strand at 16.203 kb on + strand at 16.203 kb on + strand at 16.204 kb on - strand at 16.204 kb on - strand at 16.204 kb on - strand at 16.488 kb on + strand at 16.488 kb on + strand at 16.488 kb on + strand at 16.489 kb on - strand at 16.489 kb on - strand at 16.489 kb on - strand at 16.489 kb on - strand at 16.489 kb on - strand at 16.489 kb on - strand at 16.491 kb on + strand at 16.491 kb on + strand at 16.491 kb on + strand at 16.491 kb on + strand at 16.492 kb on - strand at 16.492 kb on - strand at 16.519 kb on - strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.580 kb on + strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.581 kb on - strand at 16.704 kb on + strand at 16.704 kb on + strand at 16.705 kb on - strand at 16.720 kb on + strand at 16.720 kb on + strand at 16.721 kb on - strand at 16.721 kb on - strand at 16.721 kb on - strand at 16.727 kb on + strand at 16.727 kb on + strand at 16.727 kb on + strand at 16.727 kb on + strand at 16.727 kb on + strand at 16.728 kb on - strand at 16.728 kb on - strand at 16.739 kb on + strand at 16.739 kb on + strand at 16.773 kb on - strand at 16.790 kb on + strand at 16.827 kb on + strand at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.896 kb on + strand, within Ac3H11_3804 at 16.897 kb on - strand, within Ac3H11_3804 at 16.897 kb on - strand, within Ac3H11_3804 at 16.897 kb on - strand, within Ac3H11_3804 at 16.897 kb on - strand, within Ac3H11_3804 at 17.025 kb on + strand, within Ac3H11_3804 at 17.025 kb on + strand, within Ac3H11_3804 at 17.025 kb on + strand, within Ac3H11_3804 at 17.025 kb on + strand, within Ac3H11_3804 at 17.026 kb on - strand, within Ac3H11_3804 at 17.046 kb on + strand, within Ac3H11_3804 at 17.046 kb on + strand, within Ac3H11_3804 at 17.046 kb on + strand, within Ac3H11_3804 at 17.046 kb on + strand, within Ac3H11_3804 at 17.157 kb on + strand, within Ac3H11_3804 at 17.157 kb on + strand, within Ac3H11_3804 at 17.169 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.358 kb on + strand, within Ac3H11_3804 at 17.359 kb on - strand, within Ac3H11_3804 at 17.359 kb on - strand, within Ac3H11_3804 at 17.359 kb on - strand, within Ac3H11_3804 at 17.361 kb on + strand, within Ac3H11_3804 at 17.361 kb on + strand, within Ac3H11_3804 at 17.361 kb on + strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.362 kb on - strand, within Ac3H11_3804 at 17.382 kb on + strand, within Ac3H11_3804 at 17.382 kb on + strand, within Ac3H11_3804 at 17.382 kb on + strand, within Ac3H11_3804 at 17.382 kb on + strand, within Ac3H11_3804 at 17.382 kb on + strand, within Ac3H11_3804 at 17.383 kb on - strand, within Ac3H11_3804 at 17.383 kb on - strand, within Ac3H11_3804 at 17.383 kb on - strand, within Ac3H11_3804 at 17.495 kb on + strand at 17.495 kb on + strand at 17.496 kb on - strand at 18.113 kb on + strand, within Ac3H11_3805 at 18.173 kb on + strand, within Ac3H11_3805 at 18.173 kb on + strand, within Ac3H11_3805 at 18.173 kb on + strand, within Ac3H11_3805 at 18.173 kb on + strand, within Ac3H11_3805 at 18.174 kb on - strand, within Ac3H11_3805 at 18.225 kb on - strand, within Ac3H11_3805 at 18.225 kb on - strand, within Ac3H11_3805 at 18.386 kb on - strand, within Ac3H11_3805 at 18.386 kb on - strand, within Ac3H11_3805 at 18.413 kb on + strand, within Ac3H11_3805 at 18.413 kb on + strand, within Ac3H11_3805 at 18.413 kb on + strand, within Ac3H11_3805 at 18.413 kb on + strand, within Ac3H11_3805 at 18.413 kb on + strand, within Ac3H11_3805 at 18.414 kb on - strand, within Ac3H11_3805 at 18.414 kb on - strand, within Ac3H11_3805 at 18.414 kb on - strand, within Ac3H11_3805
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 15,887 + Ac3H11_3803 0.81 +0.1 15,887 + Ac3H11_3803 0.81 +0.8 15,887 + Ac3H11_3803 0.81 +0.1 15,888 - Ac3H11_3803 0.81 +0.6 15,888 - Ac3H11_3803 0.81 -0.5 15,888 - Ac3H11_3803 0.81 +0.7 15,888 - Ac3H11_3803 0.81 -0.1 15,926 + Ac3H11_3803 0.82 -0.1 15,926 + Ac3H11_3803 0.82 -0.5 15,927 - Ac3H11_3803 0.82 +0.2 15,927 - Ac3H11_3803 0.82 +1.1 15,927 - Ac3H11_3803 0.82 -0.8 15,927 - Ac3H11_3803 0.82 -0.9 15,927 - Ac3H11_3803 0.82 -0.1 16,013 + Ac3H11_3803 0.85 -0.9 16,013 + Ac3H11_3803 0.85 +0.5 16,013 + Ac3H11_3803 0.85 -0.0 16,013 + Ac3H11_3803 0.85 -0.0 16,013 + Ac3H11_3803 0.85 -0.0 16,013 + Ac3H11_3803 0.85 -0.6 16,014 - Ac3H11_3803 0.85 +2.2 16,014 - Ac3H11_3803 0.85 +0.2 16,014 - Ac3H11_3803 0.85 +0.2 16,014 - Ac3H11_3803 0.85 -0.1 16,014 - Ac3H11_3803 0.85 -0.4 16,053 - Ac3H11_3803 0.86 -0.4 16,203 + -0.3 16,203 + -0.5 16,203 + -0.1 16,203 + -0.2 16,204 - +0.0 16,204 - +0.6 16,204 - +1.3 16,488 + +1.2 16,488 + +0.8 16,488 + -0.4 16,489 - +0.0 16,489 - +0.5 16,489 - -1.0 16,489 - +0.4 16,489 - +0.5 16,489 - -1.5 16,491 + +0.2 16,491 + -0.7 16,491 + -0.1 16,491 + +0.2 16,492 - -1.2 16,492 - -0.1 16,519 - -0.1 16,580 + +0.2 16,580 + +0.3 16,580 + -1.0 16,580 + -1.3 16,580 + -0.3 16,580 + +0.3 16,580 + +0.1 16,580 + -0.2 16,580 + +1.2 16,580 + -0.1 16,581 - +0.4 16,581 - -0.8 16,581 - -1.4 16,581 - +0.9 16,581 - -0.8 16,581 - -1.7 16,581 - +1.6 16,581 - +0.7 16,581 - -0.1 16,581 - -0.1 16,581 - -1.2 16,581 - +0.7 16,704 + -0.5 16,704 + -0.7 16,705 - -0.3 16,720 + -0.1 16,720 + -0.2 16,721 - +0.9 16,721 - -0.2 16,721 - -0.2 16,727 + -0.7 16,727 + -0.8 16,727 + -0.7 16,727 + +3.3 16,727 + -1.2 16,728 - +0.3 16,728 - -2.3 16,739 + +0.2 16,739 + +0.0 16,773 - -0.5 16,790 + +0.3 16,827 + -0.1 16,896 + Ac3H11_3804 0.11 -0.2 16,896 + Ac3H11_3804 0.11 -1.2 16,896 + Ac3H11_3804 0.11 +0.3 16,896 + Ac3H11_3804 0.11 -0.1 16,896 + Ac3H11_3804 0.11 -0.9 16,896 + Ac3H11_3804 0.11 +1.1 16,896 + Ac3H11_3804 0.11 +3.1 16,896 + Ac3H11_3804 0.11 -0.7 16,897 - Ac3H11_3804 0.11 -0.6 16,897 - Ac3H11_3804 0.11 -0.5 16,897 - Ac3H11_3804 0.11 +0.7 16,897 - Ac3H11_3804 0.11 +1.8 17,025 + Ac3H11_3804 0.31 +0.3 17,025 + Ac3H11_3804 0.31 -1.3 17,025 + Ac3H11_3804 0.31 -1.1 17,025 + Ac3H11_3804 0.31 +0.7 17,026 - Ac3H11_3804 0.31 +0.2 17,046 + Ac3H11_3804 0.35 +0.0 17,046 + Ac3H11_3804 0.35 -0.4 17,046 + Ac3H11_3804 0.35 +0.3 17,046 + Ac3H11_3804 0.35 -0.5 17,157 + Ac3H11_3804 0.52 -0.7 17,157 + Ac3H11_3804 0.52 +0.7 17,169 + Ac3H11_3804 0.54 +0.2 17,358 + Ac3H11_3804 0.84 +0.4 17,358 + Ac3H11_3804 0.84 -0.1 17,358 + Ac3H11_3804 0.84 -1.0 17,358 + Ac3H11_3804 0.84 -1.1 17,358 + Ac3H11_3804 0.84 +0.5 17,358 + Ac3H11_3804 0.84 +0.2 17,359 - Ac3H11_3804 0.84 -0.6 17,359 - Ac3H11_3804 0.84 +0.6 17,359 - Ac3H11_3804 0.84 +0.5 17,361 + Ac3H11_3804 0.84 -0.3 17,361 + Ac3H11_3804 0.84 -0.4 17,361 + Ac3H11_3804 0.84 +1.0 17,362 - Ac3H11_3804 0.84 +0.0 17,362 - Ac3H11_3804 0.84 +0.4 17,362 - Ac3H11_3804 0.84 -0.6 17,362 - Ac3H11_3804 0.84 +0.5 17,362 - Ac3H11_3804 0.84 +1.3 17,362 - Ac3H11_3804 0.84 +1.2 17,362 - Ac3H11_3804 0.84 +0.8 17,382 + Ac3H11_3804 0.87 -0.3 17,382 + Ac3H11_3804 0.87 +0.0 17,382 + Ac3H11_3804 0.87 +0.7 17,382 + Ac3H11_3804 0.87 -0.8 17,382 + Ac3H11_3804 0.87 -0.0 17,383 - Ac3H11_3804 0.88 +0.6 17,383 - Ac3H11_3804 0.88 +0.2 17,383 - Ac3H11_3804 0.88 +0.1 17,495 + -0.1 17,495 + +0.7 17,496 - -0.4 18,113 + Ac3H11_3805 0.32 -0.1 18,173 + Ac3H11_3805 0.35 +0.5 18,173 + Ac3H11_3805 0.35 -0.3 18,173 + Ac3H11_3805 0.35 +1.7 18,173 + Ac3H11_3805 0.35 -0.0 18,174 - Ac3H11_3805 0.35 +1.2 18,225 - Ac3H11_3805 0.37 -0.5 18,225 - Ac3H11_3805 0.37 -0.5 18,386 - Ac3H11_3805 0.45 -1.1 18,386 - Ac3H11_3805 0.45 +0.3 18,413 + Ac3H11_3805 0.46 +0.1 18,413 + Ac3H11_3805 0.46 -0.1 18,413 + Ac3H11_3805 0.46 +0.5 18,413 + Ac3H11_3805 0.46 -0.3 18,413 + Ac3H11_3805 0.46 -0.5 18,414 - Ac3H11_3805 0.46 -0.7 18,414 - Ac3H11_3805 0.46 -0.0 18,414 - Ac3H11_3805 0.46 +0.6
Or see this region's nucleotide sequence